Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

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Lorenzo Bonaguro

Dr.
University of Bonn
Genomics & Immunoregulation, LIMES
Venusberg-Campus 1, 53127 Bonn, Germany
Bonn 53127
+49 228 43302691
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Ba?ler K, Schmidleithner L, Shakiba MH, Elmzzahi T, K?hne M, Floess S, Scholz R, Ohkura N, Sadlon T, Klee K, Neubauer A, Sakaguchi S, Barry SC, Huehn J, Bonaguro L, Ulas T, Beyer M. Identification of the novel FOXP3-dependent Treg cell transcription factor MEOX1 by high-dimensional analysis of human CD4+ T cells. Front Immunol. 2023; 14:1107397. PMID: 37559728; PMCID: PMC10407399.
      Citations:    Fields:    Translation:HumansCells
    2. Kapellos TS, Ba?ler K, Fujii W, Nalkurthi C, Schaar AC, Bonaguro L, Pecht T, Galvao I, Agrawal S, Saglam A, Dudkin E, Frishberg A, de Domenico E, Horne A, Donovan C, Kim RY, Gallego-Ortega D, Gillett TE, Ansari M, Schulte-Schrepping J, Offermann N, Antignano I, Sivri B, Lu W, Eapen MS, van Uelft M, Osei-Sarpong C, van den Berge M, Donker HC, Groen HJM, Sohal SS, Klein J, Schreiber T, Fei?t A, Yildirim A?, Schiller HB, Nawijn MC, Becker M, H?ndler K, Beyer M, Capasso M, Ulas T, Hasenauer J, Pizarro C, Theis FJ, Hansbro PM, Skowasch D, Schultze JL. Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease. Cell Rep. 2023 Jun 27; 42(6):112525. PMID: 37243592; PMCID: PMC10320832.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    3. Aschenbrenner AC, Bonaguro L. huva: A human variation analysis framework to predict gene perturbation from population-scale multi-omics data. STAR Protoc. 2023 Mar 24; 4(2):102193. PMID: 36964906; PMCID: PMC10050770.
      Citations:    Fields:    
    4. Shakiba MH, Gem?nd I, Beyer M, Bonaguro L. Lung T cell response in COVID-19. Front Immunol. 2023; 14:1108716. PMID: 36875071; PMCID: PMC9977798.
      Citations: 3     Fields:    Translation:HumansCellsPHPublic Health
    5. Bonaguro L, Schulte-Schrepping J, Carraro C, Sun LL, Reiz B, Gem?nd I, Saglam A, Rahmouni S, Georges M, Arts P, Hoischen A, Joosten LAB, van de Veerdonk FL, Netea MG, H?ndler K, Mukherjee S, Ulas T, Schultze JL, Aschenbrenner AC. Human variation in population-wide gene expression data predicts gene perturbation phenotype. iScience. 2022 Nov 18; 25(11):105328. PMID: 36310583; PMCID: PMC9614568.
      Citations: 1     
    6. Bonaguro L, Schulte-Schrepping J, Ulas T, Aschenbrenner AC, Beyer M, Schultze JL. A guide to systems-level immunomics. Nat Immunol. 2022 10; 23(10):1412-1423. PMID: 36138185.
      Citations: 11     Fields:    
    7. Carraro C, Bonaguro L, Schulte-Schrepping J, Horne A, Oestreich M, Warnat-Herresthal S, Helbing T, De Franco M, Haendler K, Mukherjee S, Ulas T, Gandin V, Goettlich R, Aschenbrenner AC, Schultze JL, Gatto B. Decoding mechanism of action and sensitivity to drug candidates from integrated transcriptome and chromatin state. Elife. 2022 08 31; 11. PMID: 36043458; PMCID: PMC9433094.
      Citations: 1     Fields:    Translation:Cells
    8. Ba?ler K, Fujii W, Kapellos TS, Dudkin E, Reusch N, Horne A, Reiz B, Luecken MD, Osei-Sarpong C, Warnat-Herresthal S, Bonaguro L, Schulte-Schrepping J, Wagner A, G?nther P, Pizarro C, Schreiber T, Knoll R, Holsten L, Kr?ger C, De Domenico E, Becker M, H?ndler K, Wohnhaas CT, Baumgartner F, K?hler M, Theis H, Kraut M, Wadsworth MH, Hughes TK, Ferreira HJ, Hinkley E, Kaltheuner IH, Geyer M, Thiele C, Shalek AK, Fei?t A, Thomas D, Dickten H, Beyer M, Baum P, Yosef N, Aschenbrenner AC, Ulas T, Hasenauer J, Theis FJ, Skowasch D, Schultze JL. Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation. Front Immunol. 2022; 13:917232. PMID: 35979364; PMCID: PMC9377018.
      Citations: 3     Fields:    Translation:HumansCells
    9. Aulakh SK, Djudjaj S, Mei HE, Schulz AR, von Stillfried S, Boor P, Nattermann J, PA-COVID-19 Study Group, Georg P, Astaburuaga-Garc?a R, Bonaguro L, Brumhard S, Michalick L, Lippert LJ, Kostevc T, G?bel C, Schneider M, Streitz M, Demichev V, Gem?nd I, Barone M, Tober-Lau P, Helbig ET, Hillus D, Petrov L, Stein J, Dey HP, Paclik D, Iwert C, M?lleder M, B?low RD, Thiel A, Hippenstiel S, Saliba AE, Eils R, Lehmann I, Mall MA, Stricker S, R?hmel J, Corman VM, Beule D, Wyler E, Landthaler M, Obermayer B, Demir M, Wesselmann H, Suttorp N, Uhrig A, M?ller-Redetzky H, Kuebler WM, Meisel C, Ralser M, Schultze JL, Aschenbrenner AC, Thibeault C, Kurth F, Sander LE, Bl?thgen N, Sawitzki B. Complement activation induces excessive T cell cytotoxicity in severe COVID-19. Cell. 2022 02 03; 185(3):493-512.e25. PMID: 35032429; PMCID: PMC8712270.
      Citations: 75     Fields:    Translation:HumansCells
    10. Langkabel J, Horne A, Bonaguro L, Holsten L, Hesse T, Knaus A, Riedel Y, Becker M, Elmzzahi T, Bassler K, Reusch N, Yeghiazarian LH, Pecht T, Saglam A, Ulas T, Aschenbrenner AC, Kaiser F, Kubaczka C, Schultze JL, Schorle H, H?ndler K. Induction of Rosette-to-Lumen stage embryoids using reprogramming paradigms in ESCs. Nat Commun. 2021 12 16; 12(1):7322. PMID: 34916498; PMCID: PMC8677818.
      Citations: 4     Fields:    Translation:AnimalsCells
    11. Kern P, Balzer NR, Blank N, Cygon C, Wunderling K, Bender F, Frolov A, Sowa JP, Bonaguro L, Ulas T, Homrich M, Kiermaier E, Thiele C, Schultze JL, Canbay A, Bauer R, Mass E. Creld2 function during unfolded protein response is essential for liver metabolism homeostasis. FASEB J. 2021 10; 35(10):e21939. PMID: 34549824.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    12. ToVinh M, Raabe J, Kaiser KM, Rieke GJ, Bischoff J, Monin MB, Hoffmeister C, Schlabe S, Reynolds G, Hack G, Finnemann C, Nischalke HD, Strassburg CP, Stephenson E, Su Y, Gardner L, Yuan D, Chen D, Goldman J, Rosenstiel P, Schmidt SV, Latz E, Hrusovsky K, Ball AJ, Johnson JM, Koenig PA, Schmidt FI, Haniffa M, Heath JR, Deutsche COVID-19 OMICS Initiative (DeCOI), Nattermann J, Kr?mer B, Knoll R, Bonaguro L, Astaburuaga-Garc?a R, Schulte-Schrepping J, De Domenico E, Reusch N, H?ndler K, Bl?thgen N, K?mmerer BM, Keitel V, Jensen B, Stubbemann P, Kurth F, Sander LE, Sawitzki B, Aschenbrenner AC, Schultze JL. Early IFN-a signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19. Immunity. 2021 11 09; 54(11):2650-2669.e14. PMID: 34592166; PMCID: PMC8416549.
      Citations: 93     Fields:    Translation:HumansCells
    13. Schultze H, Shastry KL, Manamohan S, Mukherjee S, Garg V, Sarveswara R, Pickkers P, Ktena S, Tran F, Herr C, Petersheim D, Behrends U, Schommers P, Lehmann C, Augustin M, Rybniker J, Mishra N, Bernardes JP, Siever C, Desai M, Monnet B, Saridaki M, Siegel CM, Schreiber S, Kim-Hellmuth S, COVID-19 Aachen Study (COVAS), Nattermann J, Skowasch D, Kurth I, Bals R, Rosenstiel P, Netea MG, Theis F, Deutsche COVID-19 Omics Initiative (DeCOI), Giamarellos-Bourboulis EJ, Kox M, Cheran S, Woodacre MS, Goh EL, Warnat-Herresthal S, H?ndler K, Aziz NA, Bitzer M, Ossowski S, Casadei N, Kern F, Fehlmann T, Altm?ller J, Kr?mer B, Bonaguro L, Schulte-Schrepping J, De Domenico E, Kraut M, Drews A, Nuesch-Germano M, Theis H, Heyckendorf J, Keller A, N?rnberg P, Rie? O, Mukherjee S, Backes M, Aschenbrenner AC, Ulas T, Breteler MMB, Becker M, Schultze JL. Swarm Learning for decentralized and confidential clinical machine learning. Nature. 2021 06; 594(7862):265-270. PMID: 34040261; PMCID: PMC8189907.
      Citations: 107     Fields:    Translation:HumansCellsPHPublic Health
    14. Reusch N, De Domenico E, Bonaguro L, Schulte-Schrepping J, Schultze JL, Aschenbrenner AC, Ba?ler K. Neutrophils in COVID-19. Front Immunol. 2021; 12:652470. PMID: 33841435; PMCID: PMC8027077.
      Citations: 137     Fields:    Translation:HumansCellsPHPublic Health
    15. Beckert V, Rassmann S, Kayvanjoo AH, Klausen C, Bonaguro L, Botermann DS, Krause M, Moreth K, Spielmann N, da Silva-Buttkus P, Fuchs H, Gailus-Durner V, de Angelis MH, Ulas T, Aschenbrenner AC, Mass E, Wachten D, H?ndler K. Creld1 regulates myocardial development and function. J Mol Cell Cardiol. 2021 07; 156:45-56. PMID: 33773996.
      Citations: 7     Fields:    Translation:HumansAnimals
    16. Aschenbrenner AC, Mouktaroudi M, Oestreich M, Antonakos N, Nuesch-Germano M, Gkizeli K, Bonaguro L, Reusch N, Saridaki M, Knoll R, Pecht T, Kapellos TS, Doulou S, Herbert M, Holsten L, Horne A, Rovina N, Agrawal S, Dahm K, van Uelft M, Drews A, Lenkeit L, Bruse N, Gerretsen J, Gierlich J, Becker M, Kraut M, Theis H, Mengiste S, De Domenico E, Schulte-Schrepping J, Seep L, Raabe J, Hoffmeister C, ToVinh M, Rieke G, Talevi V, Skowasch D, Aziz NA, Pickkers P, van de Veerdonk FL, Netea MG, Schultze JL, Kox M, Breteler MMB, Nattermann J, Koutsoukou A, Giamarellos-Bourboulis EJ, Ulas T, German COVID-19 Omics Initiative (DeCOI), Kr?mer B, Ba?ler K, Kr?ger C, Gem?nd ID, H?ndler K, Keitel V. Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients. Genome Med. 2021 01 13; 13(1):7. PMID: 33441124; PMCID: PMC7805430.
      Citations: 131     Fields:    Translation:HumansCells
    17. De Domenico E, Bonaguro L, Schulte-Schrepping J, Becker M, Schultze JL, H?ndler K. Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19. STAR Protoc. 2020 12 18; 1(3):100233. PMID: 33377120; PMCID: PMC7757730.
      Citations: 6     Fields:    Translation:HumansCells
    18. Bonaguro L, Schmidleithner L, Schulte-Schrepping J, Warnat-Herresthal S, Horne A, Kern P, Ter Horst R, Jaeger M, Falk CS, Li Y, Mass E, Beyer M, Joosten LAB, Netea MG, Ulas T, Schultze JL, Aschenbrenner AC, K?hne M, G?nther P, Rahmouni S, Georges M. CRELD1 modulates homeostasis of the immune system in mice and humans. Nat Immunol. 2020 12; 21(12):1517-1527. PMID: 33169013.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    19. Schulte-Schrepping J, Reusch N, Zhang B, Bonaguro L, De Domenico E, Grasshoff M, Kapellos TS, Beckstette M, Pecht T, Saglam A, Mei HE, Schulz AR, Xu CJ, Horne A, Herbert M, Drews A, Raabe J, Kaiser KM, Vinh MT, Rieke G, Ulas T, Becker M, Geffers R, Schultze JL, Aschenbrenner AC, Li Y, Nattermann J, Deutsche COVID-19 OMICS Initiative (DeCOI), Paclik D, Ba?ler K, Schlickeiser S, Kr?mer B, Krammer T, Brumhard S, Wendisch D, Dietrich O, Conrad C, Kunkel D, Vafadarnejad E, Thibeault C, Pfeiffer M, Hippenstiel S, Hocke A, M?ller-Redetzky H, Heim KM, Machleidt F, Uhrig A, Bosquillon de Jarcy L, J?rgens L, Stegemann M, Gl?senkamp CR, Volk HD, Goffinet C, Landthaler M, Wyler E, Georg P, Schneider M, Dang-Heine C, Neuwinger N, Kappert K, Tauber R, Corman V, Meisel C, Witzenrath M, Drosten C, Suttorp N, von Kalle C, Kurth F, H?ndler K, Sawitzki B, Saliba AE, Sander LE. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell. 2020 09 17; 182(6):1419-1440.e23. PMID: 32810438; PMCID: PMC7405822.
      Citations: 712     Fields:    Translation:HumansCellsPHPublic Health
    20. Kapellos TS, Bonaguro L, Reusch N, Saglam A, Hinkley ER, Schultze JL, Gem?nd I. Human Monocyte Subsets and Phenotypes in Major Chronic Inflammatory Diseases. Front Immunol. 2019; 10:2035. PMID: 31543877; PMCID: PMC6728754.
      Citations: 324     Fields:    Translation:HumansAnimalsCells
    21. Aschenbrenner AC, Bassler K, Brondolin M, Bonaguro L, Carrera P, Klee K, Ulas T, Schultze JL, Hoch M. A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a. Sci Rep. 2017 06 22; 7(1):4056. PMID: 28642491; PMCID: PMC5481429.
      Citations: 1     Fields:    Translation:HumansAnimalsCells

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