Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

e.g. CCGA
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Elena De Domenico

Dr.
University of Bonn
PRECISE Platform for Genomics and Epigenomics
Venusberg-Campus 1/99, 53127 Bonn, Germany
Bonn 53127
+49 228 43302416
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Kapellos TS, Ba?ler K, Fujii W, Nalkurthi C, Schaar AC, Bonaguro L, Pecht T, Galvao I, Agrawal S, Saglam A, Dudkin E, Frishberg A, de Domenico E, Horne A, Donovan C, Kim RY, Gallego-Ortega D, Gillett TE, Ansari M, Schulte-Schrepping J, Offermann N, Antignano I, Sivri B, Lu W, Eapen MS, van Uelft M, Osei-Sarpong C, van den Berge M, Donker HC, Groen HJM, Sohal SS, Klein J, Schreiber T, Fei?t A, Yildirim A?, Schiller HB, Nawijn MC, Becker M, H?ndler K, Beyer M, Capasso M, Ulas T, Hasenauer J, Pizarro C, Theis FJ, Hansbro PM, Skowasch D, Schultze JL. Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease. Cell Rep. 2023 Jun 27; 42(6):112525. PMID: 37243592; PMCID: PMC10320832.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    2. Powell P, Sarkans U, Denning J, Papatheodorou I, von Papen M, Madissoon E, Firsova AB, Berg M, Gay ACA, Larsson L, Sountoulidis A, Teichmann SA, van Eunen K, Koppelman GH, Saeb-Parsy K, Timens W, Lundeberg J, van den Berge M, Nilsson M, Petoukhov I, Misharin AV, Adcock IM, Samakovlis C, Meyer KB, Nawijn MC, Luecken MD, Zaragosi LE, Sikkema L, De Domenico E, K?mmerle L, Saglam A, Schniering J, Mayr CH, Abalo XM, Leroy S, Horv?th P, Schultze JL, Schiller HB, Barbry P, Theis FJ. The discovAIR project: a roadmap towards the Human Lung Cell Atlas. Eur Respir J. 2022 08; 60(2). PMID: 35086829; PMCID: PMC9386332.
      Citations: 8     Fields:    Translation:Humans
    3. Ba?ler K, Fujii W, Kapellos TS, Dudkin E, Reusch N, Horne A, Reiz B, Luecken MD, Osei-Sarpong C, Warnat-Herresthal S, Bonaguro L, Schulte-Schrepping J, Wagner A, G?nther P, Pizarro C, Schreiber T, Knoll R, Holsten L, Kr?ger C, De Domenico E, Becker M, H?ndler K, Wohnhaas CT, Baumgartner F, K?hler M, Theis H, Kraut M, Wadsworth MH, Hughes TK, Ferreira HJ, Hinkley E, Kaltheuner IH, Geyer M, Thiele C, Shalek AK, Fei?t A, Thomas D, Dickten H, Beyer M, Baum P, Yosef N, Aschenbrenner AC, Ulas T, Hasenauer J, Theis FJ, Skowasch D, Schultze JL. Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation. Front Immunol. 2022; 13:917232. PMID: 35979364; PMCID: PMC9377018.
      Citations: 3     Fields:    Translation:HumansCells
    4. Duy PQ, Weise SC, Li XJ, Liang D, Dahl PJ, Ma S, Spajic A, Dong W, Juusola J, Kiziltug E, Kundishora AJ, Koundal S, Pedram MZ, Juranek SA, Cuevas E, Hao LT, Jux B, Liu F, Kim SK, Li M, Yang Y, Takeo Y, Duque A, Nelson-Williams C, Ha Y, Selvaganesan K, Robert SM, Singh AK, Allington G, Furey CG, Timberlake AT, Reeves BC, Smith H, Dunbar A, DeSpenza T, Goto J, Marlier A, Moreno-De-Luca A, Yu X, Butler WE, Carter BS, Lake EMR, Constable RT, Rakic P, Lin H, Deniz E, Benveniste H, Malvankar NS, Estrada-Veras JI, Walsh CA, Alper SL, Paeschke K, Doetzlhofer A, Jin SC, Lifton RP, Sestan N, Kolanus W, Kahle KT, Marini C, Torres-Fern?ndez LA, H?ndler K, De Domenico E, Becker M, Ulas T, Sousa AMM, Schultze JL, Wulczyn FG. Impaired neurogenesis alters brain biomechanics in a neuroprogenitor-based genetic subtype of congenital hydrocephalus. Nat Neurosci. 2022 04; 25(4):458-473. PMID: 35379995; PMCID: PMC9664907.
      Citations: 25     Fields:    Translation:HumansAnimals
    5. De Domenico E, Patrushev I, Gilchrist M, Pe?ailillo J, Palacios M, Mounieres C, Mu?oz R, Slater PG, Larra?n J. Analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling in the activation of neural stem progenitor cells. NPJ Regen Med. 2021 Oct 22; 6(1):68. PMID: 34686684; PMCID: PMC8536777.
      Citations: 3     
    6. ToVinh M, Raabe J, Kaiser KM, Rieke GJ, Bischoff J, Monin MB, Hoffmeister C, Schlabe S, Reynolds G, Hack G, Finnemann C, Nischalke HD, Strassburg CP, Stephenson E, Su Y, Gardner L, Yuan D, Chen D, Goldman J, Rosenstiel P, Schmidt SV, Latz E, Hrusovsky K, Ball AJ, Johnson JM, Koenig PA, Schmidt FI, Haniffa M, Heath JR, Deutsche COVID-19 OMICS Initiative (DeCOI), Nattermann J, Kr?mer B, Knoll R, Bonaguro L, Astaburuaga-Garc?a R, Schulte-Schrepping J, De Domenico E, Reusch N, H?ndler K, Bl?thgen N, K?mmerer BM, Keitel V, Jensen B, Stubbemann P, Kurth F, Sander LE, Sawitzki B, Aschenbrenner AC, Schultze JL. Early IFN-a signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19. Immunity. 2021 11 09; 54(11):2650-2669.e14. PMID: 34592166; PMCID: PMC8416549.
      Citations: 93     Fields:    Translation:HumansCells
    7. Schultze H, Shastry KL, Manamohan S, Mukherjee S, Garg V, Sarveswara R, Pickkers P, Ktena S, Tran F, Herr C, Petersheim D, Behrends U, Schommers P, Lehmann C, Augustin M, Rybniker J, Mishra N, Bernardes JP, Siever C, Desai M, Monnet B, Saridaki M, Siegel CM, Schreiber S, Kim-Hellmuth S, COVID-19 Aachen Study (COVAS), Nattermann J, Skowasch D, Kurth I, Bals R, Rosenstiel P, Netea MG, Theis F, Deutsche COVID-19 Omics Initiative (DeCOI), Giamarellos-Bourboulis EJ, Kox M, Cheran S, Woodacre MS, Goh EL, Warnat-Herresthal S, H?ndler K, Aziz NA, Bitzer M, Ossowski S, Casadei N, Kern F, Fehlmann T, Altm?ller J, Kr?mer B, Bonaguro L, Schulte-Schrepping J, De Domenico E, Kraut M, Drews A, Nuesch-Germano M, Theis H, Heyckendorf J, Keller A, N?rnberg P, Rie? O, Mukherjee S, Backes M, Aschenbrenner AC, Ulas T, Breteler MMB, Becker M, Schultze JL. Swarm Learning for decentralized and confidential clinical machine learning. Nature. 2021 06; 594(7862):265-270. PMID: 34040261; PMCID: PMC8189907.
      Citations: 107     Fields:    Translation:HumansCellsPHPublic Health
    8. Reusch N, De Domenico E, Bonaguro L, Schulte-Schrepping J, Schultze JL, Aschenbrenner AC, Ba?ler K. Neutrophils in COVID-19. Front Immunol. 2021; 12:652470. PMID: 33841435; PMCID: PMC8027077.
      Citations: 137     Fields:    Translation:HumansCellsPHPublic Health
    9. Aschenbrenner AC, Mouktaroudi M, Oestreich M, Antonakos N, Nuesch-Germano M, Gkizeli K, Bonaguro L, Reusch N, Saridaki M, Knoll R, Pecht T, Kapellos TS, Doulou S, Herbert M, Holsten L, Horne A, Rovina N, Agrawal S, Dahm K, van Uelft M, Drews A, Lenkeit L, Bruse N, Gerretsen J, Gierlich J, Becker M, Kraut M, Theis H, Mengiste S, De Domenico E, Schulte-Schrepping J, Seep L, Raabe J, Hoffmeister C, ToVinh M, Rieke G, Talevi V, Skowasch D, Aziz NA, Pickkers P, van de Veerdonk FL, Netea MG, Schultze JL, Kox M, Breteler MMB, Nattermann J, Koutsoukou A, Giamarellos-Bourboulis EJ, Ulas T, German COVID-19 Omics Initiative (DeCOI), Kr?mer B, Ba?ler K, Kr?ger C, Gem?nd ID, H?ndler K, Keitel V. Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients. Genome Med. 2021 01 13; 13(1):7. PMID: 33441124; PMCID: PMC7805430.
      Citations: 131     Fields:    Translation:HumansCells
    10. De Domenico E, Bonaguro L, Schulte-Schrepping J, Becker M, Schultze JL, H?ndler K. Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19. STAR Protoc. 2020 12 18; 1(3):100233. PMID: 33377120; PMCID: PMC7757730.
      Citations: 6     Fields:    Translation:HumansCells
    11. Schulte-Schrepping J, Reusch N, Zhang B, Bonaguro L, De Domenico E, Grasshoff M, Kapellos TS, Beckstette M, Pecht T, Saglam A, Mei HE, Schulz AR, Xu CJ, Horne A, Herbert M, Drews A, Raabe J, Kaiser KM, Vinh MT, Rieke G, Ulas T, Becker M, Geffers R, Schultze JL, Aschenbrenner AC, Li Y, Nattermann J, Deutsche COVID-19 OMICS Initiative (DeCOI), Paclik D, Ba?ler K, Schlickeiser S, Kr?mer B, Krammer T, Brumhard S, Wendisch D, Dietrich O, Conrad C, Kunkel D, Vafadarnejad E, Thibeault C, Pfeiffer M, Hippenstiel S, Hocke A, M?ller-Redetzky H, Heim KM, Machleidt F, Uhrig A, Bosquillon de Jarcy L, J?rgens L, Stegemann M, Gl?senkamp CR, Volk HD, Goffinet C, Landthaler M, Wyler E, Georg P, Schneider M, Dang-Heine C, Neuwinger N, Kappert K, Tauber R, Corman V, Meisel C, Witzenrath M, Drosten C, Suttorp N, von Kalle C, Kurth F, H?ndler K, Sawitzki B, Saliba AE, Sander LE. Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. Cell. 2020 09 17; 182(6):1419-1440.e23. PMID: 32810438; PMCID: PMC7405822.
      Citations: 712     Fields:    Translation:HumansCellsPHPublic Health
    12. Owens NDL, De Domenico E, Gilchrist MJ. An RNA-Seq Protocol for Differential Expression Analysis. Cold Spring Harb Protoc. 2019 06 03; 2019(6). PMID: 30952685.
      Citations: 18     Fields:    Translation:Animals
    13. De Domenico E, Owens ND, Grant IM, Gomes-Faria R, Gilchrist MJ. Molecular asymmetry in the 8-cell stage Xenopus tropicalis embryo described by single blastomere transcript sequencing. Dev Biol. 2015 Dec 15; 408(2):252-68. PMID: 26100918; PMCID: PMC4684228.
      Citations: 23     Fields:    Translation:HumansAnimalsCells
    14. Collart C, Owens ND, Bhaw-Rosun L, Cooper B, De Domenico E, Patrushev I, Sesay AK, Smith JN, Smith JC, Gilchrist MJ. High-resolution analysis of gene activity during the Xenopus mid-blastula transition. Development. 2014 May; 141(9):1927-39. PMID: 24757007; PMCID: PMC3994770.
      Citations: 53     Fields:    Translation:AnimalsCells
    15. Giannetto A, Mauceri A, Maisano M, De Domenico E, Cappello T, Oliva S, Fasulo S, Fernandes JM, Nagasawa K. Influence of continuous light treatment on expression of stress biomarkers in Atlantic cod. Dev Comp Immunol. 2014 May; 44(1):30-4. PMID: 24296437.
      Citations: 10     Fields:    Translation:Animals
    16. De Domenico E, Mauceri A, Giordano D, Maisano M, Giannetto A, Parrino V, Natalotto A, D'Agata A, Cappello T, Fasulo S. Biological responses of juvenile European sea bass (Dicentrarchus labrax) exposed to contaminated sediments. Ecotoxicol Environ Saf. 2013 Nov; 97:114-23. PMID: 23953925.
      Citations: 8     Fields:    Translation:AnimalsCells
    17. Lo Giudice A, Michaud L, De Domenico E, Porporato EM, Span? N. Diversity and antibacterial activity of the bacterial communities associated with two Mediterranean sea pens, Pennatula phosphorea and Pteroeides spinosum (Anthozoa: Octocorallia). Microb Ecol. 2013 Oct; 66(3):701-14. PMID: 23817604.
      Citations: 9     Fields:    Translation:AnimalsCells
    18. Fasulo S, Iacono F, Cappello T, Corsaro C, Maisano M, D'Agata A, Giannetto A, De Domenico E, Parrino V, Lo Paro G, Mauceri A. Metabolomic investigation of Mytilus galloprovincialis (Lamarck 1819) caged in aquatic environments. Ecotoxicol Environ Saf. 2012 Oct; 84:139-46. PMID: 22818846.
      Citations: 15     Fields:    Translation:AnimalsPHPublic Health
    19. De Domenico E, Mauceri A, Giordano D, Maisano M, Natalotto A, D'Agata A, Ferrante M, Brundo MV, Fasulo S, Gioffr? G. Effects of "in vivo" exposure to toxic sediments on juveniles of sea bass (Dicentrarchus labrax). Aquat Toxicol. 2011 Oct; 105(3-4):688-97. PMID: 21996255.
      Citations: 7     Fields:    Translation:AnimalsPHPublic Health
    20. Brunelli E, Mauceri A, Maisano M, Giannetto A, De Domenico E, Corapi B, Tripepi S, Fasulo S, Bernab? I. Ultrastructural and immunohistochemical investigation on the gills of the teleost, Thalassoma pavo L., exposed to cadmium. Acta Histochem. 2011 Feb; 113(2):201-13. PMID: 19931122.
      Citations: 10     Fields:    Translation:Animals
    21. Marino S, Mauceri A, Maisano M, Giannetto A, D'Agata A, Parrino V, Minutoli R, De Domenico E, Fasulo S. A multibiomarker approach in Coris julis living in a natural environment. Ecotoxicol Environ Saf. 2010 Oct; 73(7):1565-73. PMID: 20132985.
      Citations: 10     Fields:    Translation:AnimalsPHPublic Health

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