Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

e.g. CCGA
(min 2 characters)

Julia Franzen

Dr.
RWTH Aachen University
Genomics Facility, IZKF
Pauwelsstraße 30, 52074 Aachen, Germany
Aachen 52074
+49 241 8036537
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Talpan D, Salla S, Meusel L, Walter P, Kuo CC, Franzen J, Fuest M. P32-A134 Cytoprotective effects of human platelet lysate during the xeno-free culture of human donor corneas. BMJ Open Ophthalmol. 2023 08; 8(Suppl 2):A13. PMID: 37604555.
      Citations:    Fields:    Translation:HumansCells
    2. Salz L, Seitz A, Sch?fer D, Franzen J, Holzer T, Garcia-Prieto CA, B?rger I, Hardt O, Esteller M, Wagner W. Culture expansion of CAR T cells results in aberrant DNA methylation that is associated with adverse clinical outcome. Leukemia. 2023 09; 37(9):1868-1878. PMID: 37452103; PMCID: PMC10457202.
      Citations:    Fields:    Translation:HumansCells
    3. Talpan D, Salla S, Meusel L, Walter P, Kuo CC, Franzen J, Fuest M. Cytoprotective Effects of Human Platelet Lysate during the Xeno-Free Culture of Human Donor Corneas. Int J Mol Sci. 2023 Feb 02; 24(3). PMID: 36769200; PMCID: PMC9917909.
      Citations: 2     Fields:    Translation:HumansCells
    4. Wiedmann M, Kuitunen-Paul S, Basedow LA, Wolff M, DiDonato N, Franzen J, Wagner W, Roessner V, Golub Y. DNA methylation changes associated with cannabis use and verbal learning performance in adolescents: an exploratory whole genome methylation study. Transl Psychiatry. 2022 08 06; 12(1):317. PMID: 35933470; PMCID: PMC9357061.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    5. Cypris O, Franzen J, Frobel J, Gl?ck P, Kuo CC, Schmitz S, N?chtern S, Zenke M, Wagner W. Hematopoietic differentiation persists in human iPSCs defective in de novo DNA methylation. BMC Biol. 2022 06 15; 20(1):141. PMID: 35705990; PMCID: PMC9202186.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    6. Franzen J, Tharmapalan V, Vieri M, Han Y, Balfanz P, Marx N, Dreher M, Dahl E, Beier F, Wagner W, N?chtern S, Nikolic M, Br?mmendorf TH. Epigenetic Clocks Are Not Accelerated in COVID-19 Patients. Int J Mol Sci. 2021 Aug 27; 22(17). PMID: 34502212; PMCID: PMC8431654.
      Citations: 15     Fields:    Translation:HumansCells
    7. Kuo CC, Hapala J, Franzen J, Eipel M, Platzbecker U, Kirschner M, Beier F, Jost E, Thiede C, Wagner W, Bo?ic T. Investigation of measurable residual disease in acute myeloid leukemia by DNA methylation patterns. Leukemia. 2022 01; 36(1):80-89. PMID: 34131280; PMCID: PMC8727289.
      Citations: 8     Fields:    Translation:HumansCells
    8. Franzen J, Georgomanolis T, Selich A, Kuo CC, Brant L, Mulabdic MS, Fernandez-Rebollo E, Grezella C, Ostrowska A, Begemann M, Ho AD, Rothe M, Schambach A, Papantonis A, Wagner W, St?ger R, Nikolic M, Rath B. DNA methylation changes during long-term in vitro cell culture are caused by epigenetic drift. Commun Biol. 2021 05 19; 4(1):598. PMID: 34011964; PMCID: PMC8134454.
      Citations: 15     Translation:HumansCells
    9. de Haan G, Geiger H, Han Y, Nikolic M, Gobs M, Franzen J, Wagner W. Targeted methods for epigenetic age predictions in mice. Sci Rep. 2020 12 31; 10(1):22439. PMID: 33384442; PMCID: PMC7775437.
      Citations: 6     Fields:    Translation:AnimalsCells
    10. Cypris O, Eipel M, Franzen J, Tharmapalan V, Kuo CC, Vieri M, Kirschner M, Zenke M, Lampert A, Beier F, Wagner W, R?sseler C, Nikolic M, Br?mmendorf TH. PRDM8 reveals aberrant DNA methylation in aging syndromes and is relevant for hematopoietic and neuronal differentiation. Clin Epigenetics. 2020 08 20; 12(1):125. PMID: 32819411; PMCID: PMC7439574.
      Citations: 9     Fields:    Translation:HumansCells
    11. Stiehl T, Strathmann K, Han Y, Franzen J, Gobs M, Kuo CC, Nikolic M, Hapala J, Koop BE, Ritz-Timme S, Wagner W. New targeted approaches for epigenetic age predictions. BMC Biol. 2020 06 24; 18(1):71. PMID: 32580727; PMCID: PMC7315536.
      Citations: 31     Fields:    Translation:HumansCells
    12. Hollmann J, Brecht J, Goetzke R, Franzen J, Selich A, Schmidt M, Eipel M, Ostrowska A, Hapala J, Fernandez-Rebollo E, Rothe M, Eggermann T, Zenke M, Wagner W, M?ller-Newen G. Genetic barcoding reveals clonal dominance in iPSC-derived mesenchymal stromal cells. Stem Cell Res Ther. 2020 03 05; 11(1):105. PMID: 32138773; PMCID: PMC7059393.
      Citations: 9     Fields:    Translation:Cells
    13. Fernandez-Rebollo E, Franzen J, Goetzke R, Hollmann J, Ostrowska A, Oliverio M, Sieben T, Kornfeld JW, Wagner W, Rath B. Senescence-Associated Metabolomic Phenotype in Primary and iPSC-Derived Mesenchymal Stromal Cells. Stem Cell Reports. 2020 02 11; 14(2):201-209. PMID: 31983656; PMCID: PMC7013233.
      Citations: 33     Fields:    Translation:HumansCells
    14. Goetzke R, Keijdener H, Franzen J, Ostrowska A, Mela P, Wagner W, N?chtern S. Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels. Sci Rep. 2019 10 30; 9(1):15578. PMID: 31666572; PMCID: PMC6821810.
      Citations: 10     Fields:    Translation:HumansCells
    15. Sontag S, Szymanski de Toledo MA, Zenke M, Cypris O, Frobel J, Rai S, Franzen J, Goetzke R, Wagner W. Tracking of epigenetic changes during hematopoietic differentiation of induced pluripotent stem cells. Clin Epigenetics. 2019 02 04; 11(1):19. PMID: 30717806; PMCID: PMC6360658.
      Citations: 5     Fields:    Translation:HumansCells
    16. Frank S, Ahuja G, Bartsch D, Russ N, Yao W, Kuo JC, Derks JP, Akhade VS, Messling JE, Gramm M, Rehimi R, Vargas NE, Kuroczik A, Yang TP, Sahito RGA, Franzen J, Hescheler J, Sachinidis A, Peifer M, Rada-Iglesias A, Kanduri M, Costa IG, Kanduri C, Kurian L, Kargapolova Y, Georgomanolis T, Brant L, Papantonis A. yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Cell Stem Cell. 2019 02 07; 24(2):318-327.e8. PMID: 30554961.
      Citations: 27     Fields:    Translation:HumansAnimalsCells
    17. Han Y, Eipel M, Franzen J, Sakk V, Dethmers-Ausema B, Yndriago L, Izeta A, de Haan G, Geiger H, Wagner W. Epigenetic age-predictor for mice based on three CpG sites. Elife. 2018 08 24; 7. PMID: 30142075; PMCID: PMC6156076.
      Citations: 27     Fields:    Translation:AnimalsCells
    18. Rahmig S, Waskow C, Frobel J, Franzen J, Wagner W. Epigenetic aging of human hematopoietic cells is not accelerated upon transplantation into mice. Clin Epigenetics. 2018; 10:67. PMID: 29796118; PMCID: PMC5964682.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    19. Zirkel A, Nikolic M, Sofiadis K, Mallm JP, Brackley CA, Gothe H, Drechsel O, Becker C, Josipovic N, Georgomanolis T, Brant L, Franzen J, Koker M, Gusmao EG, Costa IG, Ullrich RT, Wagner W, Roukos V, Marenduzzo D, Rippe K, Papantonis A, Altm?ller J, N?rnberg P. HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types. Mol Cell. 2018 05 17; 70(4):730-744.e6. PMID: 29706538.
      Citations: 88     Fields:    Translation:HumansCells
    20. Beier F, Grezella C, Fernandez-Rebollo E, Franzen J, Ventura Ferreira MS, Wagner W. Effects of senolytic drugs on human mesenchymal stromal cells. Stem Cell Res Ther. 2018 04 18; 9(1):108. PMID: 29669575; PMCID: PMC5907463.
      Citations: 29     Fields:    Translation:HumansCells
    21. Goetzke R, Franzen J, Ostrowska A, Vogt M, Blaeser A, Fischer H, Zenke M, Wagner W, Klein G, Rath B. Does soft really matter? Differentiation of induced pluripotent stem cells into mesenchymal stromal cells is not influenced by soft hydrogels. Biomaterials. 2018 02; 156:147-158. PMID: 29197223.
      Citations: 12     Fields:    Translation:HumansCells
    22. Fernandez-Rebollo E, Franzen J, Abagnale G, Sieben T, Ostrowska A, Hoffmann P, Lemaitre JM, Bischof O, Wagner W, Mentrup B, Ebert R, Roux PF, Rath B, Goodhardt M, Jakob F. Human Platelet Lysate versus Fetal Calf Serum: These Supplements Do Not Select for Different Mesenchymal Stromal Cells. Sci Rep. 2017 07 11; 7(1):5132. PMID: 28698620; PMCID: PMC5506010.
      Citations: 31     Fields:    Translation:HumansAnimalsCells
    23. Franzen J, Zirkel A, Blake J, Benes V, Papantonis A, Wagner W, Rath B. Senescence-associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells. Aging Cell. 2017 Feb; 16(1):183-191. PMID: 27785870; PMCID: PMC5242294.
      Citations: 42     Fields:    Translation:HumansCells
    24. Kalwa M, Otto S, Kuo CC, Franzen J, Joussen S, Fernandez-Rebollo E, Koch C, Hofmann A, Lee SH, Teschendorff AE, Denecke B, Lin Q, Widschwendter M, Weinhold E, Costa IG, Wagner W, H?nzelmann S, Rath B. The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation. Nucleic Acids Res. 2016 12 15; 44(22):10631-10643. PMID: 27634931; PMCID: PMC5159544.
      Citations: 91     Fields:    Translation:HumansCells
    25. Zenke M, Costa IG, de Almeida DC, Ferreira MR, Franzen J, Weidner CI, Frobel J, Wagner W. Epigenetic Classification of Human Mesenchymal Stromal Cells. Stem Cell Reports. 2016 Feb 09; 6(2):168-75. PMID: 26862701; PMCID: PMC4750140.
      Citations: 28     Fields:    Translation:HumansCells
    26. Dib-Hajj SD, Boulanger SC, Hebbar SK, Peebles CL, Franzen JS, Perlman PS. Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing. Nucleic Acids Res. 1993 Apr 25; 21(8):1797-804. PMID: 8493099; PMCID: PMC309417.
      Citations: 12     Fields:    Translation:HumansCells
    27. Franzen JS, Zhang M, Peebles CL. Kinetic analysis of the 5' splice junction hydrolysis of a group II intron promoted by domain 5. Nucleic Acids Res. 1993 Feb 11; 21(3):627-34. PMID: 8382803; PMCID: PMC309162.
      Citations: 16     Fields:    Translation:AnimalsCells

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