Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

e.g. CCGA
(min 2 characters)

Frank Hochholdinger

Prof.
University of Bonn
Agriculture
Friedrich-Ebert-Allee 144, 53113 Bonn, Germany
Bonn 53113
+49 228 7360334
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Zhao M, Peng Z, Qin Y, Tamang TM, Zhang L, Tian B, Chen Y, Liu Y, Zhang J, Lin G, Zheng H, He C, Lv K, Klaus A, Marcon C, Hochholdinger F, Trick HN, Liu Y, Cho MJ, Park S, Wei H, Zheng J, White FF, Liu S. Bacterium-enabled transient gene activation by artificial transcription factors for resolving gene regulation in maize. Plant Cell. 2023 08 02; 35(8):2736-2749. PMID: 37233025; PMCID: PMC10396389.
      Citations: 1     Fields:    Translation:AnimalsCells
    2. Baldauf JA, Hochholdinger F. Molecular dissection of heterosis in cereal roots and their rhizosphere. Theor Appl Genet. 2023 Jul 20; 136(8):173. PMID: 37474870; PMCID: PMC10359381.
      Citations:    Fields:    Translation:Animals
    3. Guo L, Klaus A, Baer M, Kirschner GK, Salvi S, Hochholdinger F. ENHANCED GRAVITROPISM 2 coordinates molecular adaptations to gravistimulation in the elongation zone of barley roots. New Phytol. 2023 03; 237(6):2196-2209. PMID: 36604847.
      Citations:    Fields:    Translation:Animals
    4. Baer M, Taramino G, Multani D, Sakai H, Jiao S, Fengler K, Hochholdinger F. Maize lateral rootless 1 encodes a homolog of the DCAF protein subunit of the CUL4-based E3 ubiquitin ligase complex. New Phytol. 2023 02; 237(4):1204-1214. PMID: 36345913.
      Citations:    Fields:    Translation:Animals
    5. Fusi R, Rosignoli S, Lou H, Sangiorgi G, Bovina R, Pattem JK, Borkar AN, Lombardi M, Forestan C, Milner SG, Davis JL, Lale A, Kirschner GK, Swarup R, Tassinari A, Pandey BK, York LM, Atkinson BS, Sturrock CJ, Mooney SJ, Hochholdinger F, Tucker MR, Himmelbach A, Stein N, Mascher M, Nagel KA, Simmonds J, Uauy C, Tuberosa R, Lynch JP, Yakubov GE, Bennett MJ, Bhosale R, Salvi S, De Gara L. Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism. Proc Natl Acad Sci U S A. 2022 08 02; 119(31):e2201350119. PMID: 35881796; PMCID: PMC9351459.
      Citations: 6     Fields:    Translation:AnimalsCells
    6. Klaus A, Hochholdinger F, Shellakkutti N, Thangamani PD, Suresh K, Baales J, Zeisler-Diehl V, Schreiber L, Kreszies T. Cuticular transpiration is not affected by enhanced wax and cutin amounts in response to osmotic stress in barley. Physiol Plant. 2022 Jul; 174(4):e13735. PMID: 35716005.
      Citations: 1     Fields:    Translation:Animals
    7. Baldauf JA, Liu M, Vedder L, Yu P, Piepho HP, Schoof H, Nettleton D, Hochholdinger F. Single-parent expression complementation contributes to phenotypic heterosis in maize hybrids. Plant Physiol. 2022 06 27; 189(3):1625-1638. PMID: 35522211; PMCID: PMC9237695.
      Citations: 3     Fields:    Translation:Animals
    8. St?cker T, Altrogge L, Marcon C, Win YN, Hochholdinger F, Schoof H. MuWU: Mutant-seq library analysis and annotation. Bioinformatics. 2022 01 12; 38(3):837-838. PMID: 34586393; PMCID: PMC8756183.
      Citations:    Fields:    Translation:AnimalsCells
    9. Kirschner GK, Rosignoli S, Guo L, Vardanega I, Imani J, Milner SG, Balzano R, Forestan C, Bovina R, Mascher M, Simmonds J, Uauy C, Schoof H, Tuberosa R, Salvi S, Hochholdinger F, Altm?ller J, Nagel KA, Pflugfelder D, Koller R, St?cker TG. ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF-containing protein that controls root growth angle in barley and wheat. Proc Natl Acad Sci U S A. 2021 08 31; 118(35). PMID: 34446550; PMCID: PMC8536364.
      Citations: 14     Fields:    Translation:AnimalsCells
    10. Zhou Y, Sommer ML, Hochholdinger F. Cold response and tolerance in cereal roots. J Exp Bot. 2021 Jul 16. PMID: 34270744.
      Citations: 6     Fields:    
    11. Yu P, He X, Baer M, Beirinckx S, Tian T, Moya YAT, Deichmann M, Frey FP, Bresgen V, Li C, Razavi BS, Schaaf G, Su Z, Bucher M, Tsuda K, Goormachtig S, Chen X, Hochholdinger F, Zhang X, von Wir?n N. Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation. Nat Plants. 2021 04; 7(4):481-499. PMID: 33833418.
      Citations: 76     Fields:    Translation:AnimalsCellsPHPublic Health
    12. Bonkowski M, Tarkka M, Razavi BS, Schmidt H, Blagodatskaya E, Yu P, Knief C, Hochholdinger F, Vetterlein D, Koller R. Spatiotemporal Dynamics of Maize (Zea mays L.) Root Growth and Its Potential Consequences for the Assembly of the Rhizosphere Microbiota. Front Microbiol. 2021; 12:619499. PMID: 33815308; PMCID: PMC8010349.
      Citations: 6     
    13. Feng K, Dumack K, Freudenthal J, Chen Y, Sun R, Wilson M, Yu P, Sun B, Deng Y, Hochholdinger F, Vetterlein D, Bonkowski M, R?ger L. Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.). Front Microbiol. 2021; 12:614501. PMID: 33643242; PMCID: PMC7906986.
      Citations: 15     
    14. Marcon C, Altrogge L, Win YN, Gardiner JM, Portwood JL, Opitz N, Kortz A, Baldauf JA, Hunter CT, McCarty DR, Koch KE, Schoof H, Hochholdinger F, St?cker T. BonnMu: A Sequence-Indexed Resource of Transposon-Induced Maize Mutations for Functional Genomics Studies. Plant Physiol. 2020 10; 184(2):620-631. PMID: 32769162; PMCID: PMC7536688.
      Citations: 7     Fields:    Translation:AnimalsCells
    15. Haberer G, Kamal N, Bauer E, Gundlach H, Fischer I, Seidel MA, Spannagl M, Marcon C, Ruban A, Urbany C, Nemri A, Hochholdinger F, Ouzunova M, Houben A, Mayer KFX, Sch?n CC. European maize genomes highlight intraspecies variation in repeat and gene content. Nat Genet. 2020 09; 52(9):950-957. PMID: 32719517; PMCID: PMC7467862.
      Citations: 37     Fields:    Translation:Animals
    16. Frey FP, Pitz M, Hochholdinger F, Sch?n CC. Transcriptomic diversity in seedling roots of European flint maize in response to cold. BMC Genomics. 2020 Apr 15; 21(1):300. PMID: 32293268; PMCID: PMC7158136.
      Citations: 4     Fields:    Translation:AnimalsCells
    17. Baldauf JA, Vedder L, Schoof H, Hochholdinger F. Robust non-syntenic gene expression patterns in diverse maize hybrids during root development. J Exp Bot. 2020 01 23; 71(3):865-876. PMID: 31638701.
      Citations: 2     Fields:    Translation:Animals
    18. Klamer F, Vogel F, Li X, Bremer H, Hochholdinger F, Ludewig U, Neumann G, Neuh?user B. Estimating the importance of maize root hairs in low phosphorus conditions and under drought. Ann Bot. 2019 11 27; 124(6):961-968. PMID: 30759179; PMCID: PMC6881218.
      Citations: 11     Fields:    Translation:Animals
    19. Kreszies T, Eggels S, Kreszies V, Osthoff A, Shellakkutti N, Baldauf JA, Zeisler-Diehl VV, Hochholdinger F, Ranathunge K, Schreiber L. Seminal roots of wild and cultivated barley differentially respond to osmotic stress in gene expression, suberization, and hydraulic conductivity. Plant Cell Environ. 2020 02; 43(2):344-357. PMID: 31762057.
      Citations: 17     Fields:    Translation:AnimalsCells
    20. Zheng Z, Hey S, Jubery T, Liu H, Yang Y, Coffey L, Miao C, Sigmon B, Schnable JC, Hochholdinger F, Ganapathysubramanian B, Schnable PS. Shared Genetic Control of Root System Architecture between Zea mays and Sorghum bicolor. Plant Physiol. 2020 02; 182(2):977-991. PMID: 31740504; PMCID: PMC6997706.
      Citations: 22     Fields:    Translation:Animals
    21. Osthoff A, Baldauf JA, Piepho HP, Hochholdinger F, Don? Dalle Rose P. Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress. BMC Genomics. 2019 Apr 29; 20(1):325. PMID: 31035922; PMCID: PMC6489292.
      Citations: 17     Fields:    Translation:Animals
    22. Yu P, Hochholdinger F, Li C. Plasticity of Lateral Root Branching in Maize. Front Plant Sci. 2019; 10:363. PMID: 30984221; PMCID: PMC6449698.
      Citations: 12     
    23. Kortz A, Hochholdinger F, Yu P. Cell Type-Specific Transcriptomics of Lateral Root Formation and Plasticity. Front Plant Sci. 2019; 10:21. PMID: 30809234; PMCID: PMC6379339.
      Citations: 4     
    24. Yu P, Hochholdinger F. The Role of Host Genetic Signatures on Root-Microbe Interactions in the Rhizosphere and Endosphere. Front Plant Sci. 2018; 9:1896. PMID: 30619438; PMCID: PMC6305752.
      Citations: 20     
    25. Hochholdinger F, Baldauf JA. Heterosis in plants. Curr Biol. 2018 09 24; 28(18):R1089-R1092. PMID: 30253145.
      Citations: 40     Fields:    Translation:Animals
    26. Ashrafuzzaman M, Haque Z, Ali B, Mathew B, Yu P, Hochholdinger F, de Abreu Neto JB, McGillen MR, Manning WJ, Frei M, Ensikat HJ. Ethylenediurea (EDU) mitigates the negative effects of ozone in rice: Insights into its mode of action. Plant Cell Environ. 2018 12; 41(12):2882-2898. PMID: 30107647.
      Citations: 9     Fields:    Translation:AnimalsCells
    27. Kreszies T, Shellakkutti N, Osthoff A, Yu P, Baldauf JA, Zeisler-Diehl VV, Ranathunge K, Hochholdinger F, Schreiber L. Osmotic stress enhances suberization of apoplastic barriers in barley seminal roots: analysis of chemical, transcriptomic and physiological responses. New Phytol. 2019 01; 221(1):180-194. PMID: 30055115; PMCID: PMC6586163.
      Citations: 31     Fields:    Translation:AnimalsCells
    28. Hochholdinger F, Marcon C, Baldauf JA, Yu P, Frey FP. Proteomics of Maize Root Development. Front Plant Sci. 2018; 9:143. PMID: 29556242; PMCID: PMC5844967.
      Citations: 11     
    29. Baldauf JA, Marcon C, Lithio A, Vedder L, Altrogge L, Schoof H, Nettleton D, Hochholdinger F, Piepho HP. Single-Parent Expression Is a General Mechanism Driving Extensive Complementation of Non-syntenic Genes in Maize Hybrids. Curr Biol. 2018 02 05; 28(3):431-437.e4. PMID: 29358068.
      Citations: 19     Fields:    Translation:AnimalsCells
    30. Yu P, Wang C, Baldauf JA, Tai H, Gutjahr C, Hochholdinger F, Li C. Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots. New Phytol. 2018 02; 217(3):1240-1253. PMID: 29154441.
      Citations: 28     Fields:    Translation:AnimalsCells
    31. Hochholdinger F, Yu P, Marcon C. Genetic Control of Root System Development in Maize. Trends Plant Sci. 2018 01; 23(1):79-88. PMID: 29170008.
      Citations: 62     Fields:    Translation:Animals
    32. Hey S, Baldauf J, Opitz N, Lithio A, Pasha A, Provart N, Nettleton D, Hochholdinger F. Complexity and specificity of the maize (Zea mays L.) root hair transcriptome. J Exp Bot. 2017 04 01; 68(9):2175-2185. PMID: 28398587; PMCID: PMC5447894.
      Citations: 9     Fields:    Translation:AnimalsCells
    33. Tai H, Opitz N, Lithio A, Lu X, Nettleton D, Hochholdinger F. Non-syntenic genes drive RTCS-dependent regulation of the embryo transcriptome during formation of seminal root primordia in maize (Zea mays L.). J Exp Bot. 2017 01 01; 68(3):403-414. PMID: 28204533; PMCID: PMC5444478.
      Citations: 6     Fields:    Translation:AnimalsCells
    34. Marcon C, Paschold A, Malik WA, Lithio A, Baldauf JA, Altrogge L, Opitz N, Lanz C, Schoof H, Nettleton D, Piepho HP, Hochholdinger F. Stability of Single-Parent Gene Expression Complementation in Maize Hybrids upon Water Deficit Stress. Plant Physiol. 2017 02; 173(2):1247-1257. PMID: 27999083; PMCID: PMC5291719.
      Citations: 11     Fields:    Translation:Animals
    35. Li L, Hey S, Liu S, Liu Q, McNinch C, Hu HC, Wen TJ, Marcon C, Paschold A, Bruce W, Schnable PS, Hochholdinger F. Characterization of maize roothairless6 which encodes a D-type cellulose synthase and controls the switch from bulge formation to tip growth. Sci Rep. 2016 10 06; 6:34395. PMID: 27708345; PMCID: PMC5052636.
      Citations: 18     Fields:    Translation:Animals
    36. Yu P, Gutjahr C, Li C, Hochholdinger F. Genetic Control of Lateral Root Formation in Cereals. Trends Plant Sci. 2016 11; 21(11):951-961. PMID: 27524642.
      Citations: 40     Fields:    Translation:AnimalsCells
    37. Hochholdinger F. Untapping root system architecture for crop improvement. J Exp Bot. 2016 08; 67(15):4431-3. PMID: 27493225; PMCID: PMC4973748.
      Citations: 16     Fields:    Translation:Animals
    38. Sebastian J, Yee MC, Goudinho Viana W, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Rell?n-?lvarez R, Dinneny JR. Grasses suppress shoot-borne roots to conserve water during drought. Proc Natl Acad Sci U S A. 2016 08 02; 113(31):8861-6. PMID: 27422554; PMCID: PMC4978293.
      Citations: 39     Fields:    Translation:Animals
    39. Ludwig Y, Hochholdinger F, Miyaura C, Inada M, Anjam MS, Siddique S, Grundler FM. An improved procedure for isolation of high-quality RNA from nematode-infected Arabidopsis roots through laser capture microdissection. Plant Methods. 2016; 12:25. PMID: 27123040; PMCID: PMC4847226.
      Citations: 10     
    40. Baldauf JA, Marcon C, Paschold A, Hochholdinger F. Nonsyntenic Genes Drive Tissue-Specific Dynamics of Differential, Nonadditive, and Allelic Expression Patterns in Maize Hybrids. Plant Physiol. 2016 06; 171(2):1144-55. PMID: 27208302; PMCID: PMC4902609.
      Citations: 17     Fields:    Translation:AnimalsCells
    41. Yu P, Baldauf JA, Lithio A, Marcon C, Nettleton D, Li C, Hochholdinger F. Root Type-Specific Reprogramming of Maize Pericycle Transcriptomes by Local High Nitrate Results in Disparate Lateral Root Branching Patterns. Plant Physiol. 2016 Mar; 170(3):1783-98. PMID: 26811190; PMCID: PMC4775145.
      Citations: 23     Fields:    Translation:Animals
    42. Zhang Y, Marcon C, Tai H, von Behrens I, Ludwig Y, Hey S, Berendzen KW, Hochholdinger F. Conserved and unique features of the homeologous maize Aux/IAA proteins ROOTLESS WITH UNDETECTABLE MERISTEM 1 and RUM1-like 1. J Exp Bot. 2016 Feb; 67(4):1137-47. PMID: 26672614; PMCID: PMC4753850.
      Citations: 8     Fields:    Translation:AnimalsCells
    43. Tai H, Lu X, Opitz N, Marcon C, Paschold A, Lithio A, Nettleton D, Hochholdinger F. Transcriptomic and anatomical complexity of primary, seminal, and crown roots highlight root type-specific functional diversity in maize (Zea mays L.). J Exp Bot. 2016 Feb; 67(4):1123-35. PMID: 26628518; PMCID: PMC4753849.
      Citations: 29     Fields:    Translation:AnimalsCells
    44. Xu C, Luo F, Hochholdinger F. LOB Domain Proteins: Beyond Lateral Organ Boundaries. Trends Plant Sci. 2016 Feb; 21(2):159-167. PMID: 26616195.
      Citations: 71     Fields:    Translation:Cells
    45. Opitz N, Marcon C, Paschold A, Malik WA, Lithio A, Brandt R, Piepho HP, Nettleton D, Hochholdinger F. Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit. J Exp Bot. 2016 Feb; 67(4):1095-107. PMID: 26463995; PMCID: PMC4753846.
      Citations: 41     Fields:    Translation:AnimalsCells
    46. Yu P, Hochholdinger F, Li C. Root-type-specific plasticity in response to localized high nitrate supply in maize (Zea mays). Ann Bot. 2015 Oct; 116(5):751-62. PMID: 26346717; PMCID: PMC4590331.
      Citations: 9     Fields:    Translation:Animals
    47. Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F. The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. J Exp Bot. 2015 Sep; 66(19):6081. PMID: 26208643; PMCID: PMC4566992.
      Citations: 1     Fields:    
    48. Yu P, Eggert K, Li C, Hochholdinger F, von Wir?n N. Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation. Plant Physiol. 2015 Sep; 169(1):690-704. PMID: 26198256; PMCID: PMC4577424.
      Citations: 26     Fields:    Translation:AnimalsCells
    49. Zhang Y, von Behrens I, Zimmermann R, Ludwig Y, Hey S, Hochholdinger F. LATERAL ROOT PRIMORDIA 1 of maize acts as a transcriptional activator in auxin signalling downstream of the Aux/IAA gene rootless with undetectable meristem 1. J Exp Bot. 2015 Jul; 66(13):3855-63. PMID: 25911745; PMCID: PMC4473986.
      Citations: 26     Fields:    Translation:AnimalsCells
    50. Xu C, Tai H, Saleem M, Ludwig Y, Meeley RB, Taramino G, Hochholdinger F, Majer C, Berendzen KW, Nagel KA, Wojciechowski T. Cooperative action of the paralogous maize lateral organ boundaries (LOB) domain proteins RTCS and RTCL in shoot-borne root formation. New Phytol. 2015 Sep; 207(4):1123-33. PMID: 25902765.
      Citations: 28     Fields:    Translation:AnimalsCells
    51. Marcon C, Malik WA, Walley JW, Shen Z, Paschold A, Smith LG, Piepho HP, Briggs SP, Hochholdinger F. A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes. Plant Physiol. 2015 May; 168(1):233-46. PMID: 25780097; PMCID: PMC4424028.
      Citations: 20     Fields:    Translation:AnimalsCells
    52. Paschold A, Larson NB, Marcon C, Schnable JC, Yeh CT, Lanz C, Nettleton D, Piepho HP, Schnable PS, Hochholdinger F. Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids. Plant Cell. 2014 Oct; 26(10):3939-48. PMID: 25315323; PMCID: PMC4247586.
      Citations: 32     Fields:    Translation:Animals
    53. Ludwig Y, Xu C, Piepho HP, Hochholdinger F, Berendzen KW. Diversity of stability, localization, interaction and control of downstream gene activity in the Maize Aux/IAA protein family. PLoS One. 2014; 9(9):e107346. PMID: 25203637; PMCID: PMC4159291.
      Citations: 8     Fields:    Translation:AnimalsCells
    54. Opitz N, Paschold A, Marcon C, Malik WA, Lanz C, Piepho HP, Hochholdinger F. Transcriptomic complexity in young maize primary roots in response to low water potentials. BMC Genomics. 2014 Aug 29; 15:741. PMID: 25174417; PMCID: PMC4174653.
      Citations: 33     Fields:    Translation:Animals
    55. Yu P, White PJ, Hochholdinger F, Li C. Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability. Planta. 2014 Oct; 240(4):667-78. PMID: 25143250.
      Citations: 30     Fields:    Translation:Animals
    56. Nestler J, Liu S, Wen TJ, Paschold A, Marcon C, Tang HM, Li D, Li L, Meeley RB, Sakai H, Bruce W, Schnable PS, Hochholdinger F. Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase. Plant J. 2014 Sep; 79(5):729-40. PMID: 24902980.
      Citations: 45     Fields:    Translation:AnimalsCells
    57. Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F. The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. J Exp Bot. 2014 Sep; 65(17):4919-30. PMID: 24928984; PMCID: PMC4144770.
      Citations: 36     Fields:    Translation:Animals
    58. Kumar B, Abdel-Ghani AH, Pace J, Reyes-Matamoros J, Hochholdinger F, L?bberstedt T. Association analysis of single nucleotide polymorphisms in candidate genes with root traits in maize (Zea mays L.) seedlings. Plant Sci. 2014 Jul; 224:9-19. PMID: 24908501.
      Citations: 16     Fields:    Translation:Animals
    59. Ludwig Y, Hochholdinger F. Laser microdissection of plant cells. Methods Mol Biol. 2014; 1080:249-58. PMID: 24132435.
      Citations: 6     Fields:    Translation:AnimalsCells
    60. Zhang Y, Hochholdinger F, Ludwig Y. The maize (Zea mays L.) AUXIN/INDOLE-3-ACETIC ACID gene family: phylogeny, synteny, and unique root-type and tissue-specific expression patterns during development. PLoS One. 2013; 8(11):e78859. PMID: 24223858; PMCID: PMC3815225.
      Citations: 24     Fields:    Translation:AnimalsCells
    61. Majer C, Beatty M, Paschold A, Fu Y, Malik WA, Schnable PS, Piepho HP, Sakai H, Hochholdinger F, Muthreich N, Sch?tzenmeister A. Comparative transcriptome profiling of maize coleoptilar nodes during shoot-borne root initiation. Plant Physiol. 2013 Sep; 163(1):419-30. PMID: 23843603; PMCID: PMC3762660.
      Citations: 15     Fields:    Translation:AnimalsCells
    62. Marcon C, Lamkemeyer T, Malik WA, Ungrue D, Piepho HP, Hochholdinger F. Heterosis-associated proteome analyses of maize (Zea mays L.) seminal roots by quantitative label-free LC-MS. J Proteomics. 2013 Nov 20; 93:295-302. PMID: 23607940.
      Citations: 14     Fields:    Translation:Animals
    63. Husakova E, Hochholdinger F, Soukup A. Lateral root development in the maize (Zea mays) lateral rootless1 mutant. Ann Bot. 2013 Jul; 112(2):417-28. PMID: 23456690; PMCID: PMC3698386.
      Citations: 9     Fields:    Translation:AnimalsCells
    64. Marcon C, Paschold A, Hochholdinger F. Genetic control of root organogenesis in cereals. Methods Mol Biol. 2013; 959:69-81. PMID: 23299668.
      Citations: 7     Fields:    Translation:Animals
    65. Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F. Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Res. 2012 Dec; 22(12):2445-54. PMID: 23086286; PMCID: PMC3514674.
      Citations: 75     Fields:    Translation:AnimalsCells
    66. Liao C, Hochholdinger F, Li C. Comparative analyses of three legume species reveals conserved and unique root extracellular proteins. Proteomics. 2012 Nov; 12(21):3219-28. PMID: 22945350.
      Citations: 1     Fields:    Translation:AnimalsCells
    67. Majer C, Xu C, Berendzen KW, Hochholdinger F. Molecular interactions of ROOTLESS CONCERNING CROWN AND SEMINAL ROOTS, a LOB domain protein regulating shoot-borne root initiation in maize (Zea mays L.). Philos Trans R Soc Lond B Biol Sci. 2012 Jun 05; 367(1595):1542-51. PMID: 22527397; PMCID: PMC3321688.
      Citations: 30     Fields:    Translation:AnimalsCells
    68. De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F, Draye X, Zhang H, Broadley MR, Hammond JP, Fukaki H, Mooney S, Lynch JP, Nacry P, Schurr U, Laplaze L, Benfey P, Beeckman T, Bennett M, P?ret B. Analyzing lateral root development: how to move forward. Plant Cell. 2012 Jan; 24(1):15-20. PMID: 22227890; PMCID: PMC3289553.
      Citations: 49     Fields:    
    69. Nestler J, Hochholdinger F, Sch?tz W. Conserved and unique features of the maize (Zea mays L.) root hair proteome. J Proteome Res. 2011 May 06; 10(5):2525-37. PMID: 21417484.
      Citations: 17     Fields:    Translation:AnimalsCells
    70. von Behrens I, Komatsu M, Zhang Y, Berendzen KW, Niu X, Sakai H, Taramino G, Hochholdinger F. Rootless with undetectable meristem 1 encodes a monocot-specific AUX/IAA protein that controls embryonic seminal and post-embryonic lateral root initiation in maize. Plant J. 2011 Apr; 66(2):341-53. PMID: 21219511.
      Citations: 52     Fields:    Translation:AnimalsCells
    71. Marcon C, Madlung J, Piepho HP, Hochholdinger F, Sch?tzenmeister A, Sch?tz W. Nonadditive protein accumulation patterns in Maize (Zea mays L.) hybrids during embryo development. J Proteome Res. 2010 Dec 03; 9(12):6511-22. PMID: 20973536.
      Citations: 19     Fields:    Translation:AnimalsCells
    72. Majer C, Hochholdinger F. Defining the boundaries: structure and function of LOB domain proteins. Trends Plant Sci. 2011 Jan; 16(1):47-52. PMID: 20961800.
      Citations: 98     Fields:    Translation:AnimalsCells
    73. Ma W, Muthreich N, Liao C, Franz-Wachtel M, Zhang F, Hochholdinger F, Li C, Sch?tz W. The mucilage proteome of maize (Zea mays L.) primary roots. J Proteome Res. 2010 Jun 04; 9(6):2968-76. PMID: 20408568.
      Citations: 17     Fields:    Translation:AnimalsCells
    74. Paschold A, Marcon C, Hoecker N, Hochholdinger F. Molecular dissection of heterosis manifestation during early maize root development. Theor Appl Genet. 2010 Jan; 120(2):383-8. PMID: 19526205.
      Citations: 29     Fields:    Translation:Animals
    75. von Behrens I, Muthreich N, Nordheim A, Hochholdinger F, Liu Y, Sch?tz W. Regulation of the pericycle proteome in maize (Zea mays L.) primary roots by RUM1 which is required for lateral root initiation. Eur J Cell Biol. 2010 Feb-Mar; 89(2-3):236-41. PMID: 19962783.
      Citations: 6     Fields:    Translation:AnimalsCells
    76. Madlung J, Krug K, Nordheim A, Piepho HP, Hochholdinger F, Muthreich N, Sch?tzenmeister A, Sch?tz W. Regulation of the maize (Zea mays L.) embryo proteome by RTCS which controls seminal root initiation. Eur J Cell Biol. 2010 Feb-Mar; 89(2-3):242-9. PMID: 19962210.
      Citations: 3     Fields:    Translation:Animals
    77. Saleem M, Lamkemeyer T, Madlung J, Sakai H, Piepho HP, Nordheim A, Hochholdinger F, Sch?tzenmeister A. Specification of cortical parenchyma and stele of maize primary roots by asymmetric levels of auxin, cytokinin, and cytokinin-regulated proteins. Plant Physiol. 2010 Jan; 152(1):4-18. PMID: 19933382; PMCID: PMC2799342.
      Citations: 17     Fields:    Translation:AnimalsCells
    78. Zimmermann R, Sakai H, Hochholdinger F. The Gibberellic Acid Stimulated-Like gene family in maize and its role in lateral root development. Plant Physiol. 2010 Jan; 152(1):356-65. PMID: 19926801; PMCID: PMC2799369.
      Citations: 41     Fields:    Translation:AnimalsCells
    79. Saleem M, Lamkemeyer T, Fladerer C, Piepho HP, Nordheim A, Hochholdinger F, Sch?tzenmeister A. Tissue specific control of the maize (Zea mays L.) embryo, cortical parenchyma, and stele proteomes by RUM1 which regulates seminal and lateral root initiation. J Proteome Res. 2009 May; 8(5):2285-97. PMID: 19267494.
      Citations: 5     Fields:    Translation:Animals
    80. Hochholdinger F, Tuberosa R. Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Biol. 2009 Apr; 12(2):172-7. PMID: 19157956.
      Citations: 92     Fields:    Translation:Animals
    81. Hoecker N, Lamkemeyer T, Sarholz B, Paschold A, Fladerer C, Madlung J, Wurster K, Stahl M, Piepho HP, Nordheim A, Hochholdinger F. Analysis of nonadditive protein accumulation in young primary roots of a maize (Zea mays L.) F(1)-hybrid compared to its parental inbred lines. Proteomics. 2008 Sep; 8(18):3882-94. PMID: 18704907.
      Citations: 24     Fields:    Translation:Animals
    82. Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho HP, Hochholdinger F. Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends. Genetics. 2008 Jul; 179(3):1275-83. PMID: 18562640; PMCID: PMC2475732.
      Citations: 50     Fields:    Translation:Animals
    83. Cole R, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler JE, H?la M, Synek L, Drdov? E, Pecenkov? T, Z?rsk? V. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Plant Cell. 2008 May; 20(5):1330-45. PMID: 18492870; PMCID: PMC2438459.
      Citations: 131     Fields:    Translation:AnimalsCells
    84. Hochholdinger F, Wen TJ, Zimmermann R, Chimot-Marolle P, da Costa e Silva O, Bruce W, Lamkey KR, Wienand U, Schnable PS. The maize (Zea mays L.) roothairless3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. Plant J. 2008 06; 54(5):888-98. PMID: 18298667; PMCID: PMC2440564.
      Citations: 68     Fields:    Translation:AnimalsCells
    85. Hochholdinger F, Zimmermann R. Conserved and diverse mechanisms in root development. Curr Opin Plant Biol. 2008 Feb; 11(1):70-4. PMID: 18006363.
      Citations: 63     Fields:    Translation:Animals
    86. Dembinsky D, Woll K, Saleem M, Liu Y, Fu Y, Borsuk LA, Lamkemeyer T, Fladerer C, Madlung J, Barbazuk B, Nordheim A, Nettleton D, Schnable PS, Hochholdinger F. Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiol. 2007 Nov; 145(3):575-88. PMID: 17766395; PMCID: PMC2048809.
      Citations: 47     Fields:    Translation:AnimalsCells
    87. Hochholdinger F, Hoecker N. Towards the molecular basis of heterosis. Trends Plant Sci. 2007 Sep; 12(9):427-32. PMID: 17720610.
      Citations: 122     Fields:    Translation:Animals
    88. Taramino G, Sauer M, Stauffer JL, Multani D, Niu X, Sakai H, Hochholdinger F. The maize (Zea mays L.) RTCS gene encodes a LOB domain protein that is a key regulator of embryonic seminal and post-embryonic shoot-borne root initiation. Plant J. 2007 May; 50(4):649-59. PMID: 17425722.
      Citations: 104     Fields:    Translation:Animals
    89. Woll K, Dressel A, Sakai H, Piepho HP, Hochholdinger F. ZmGrp3: identification of a novel marker for root initiation in maize and development of a robust assay to quantify allele-specific contribution to gene expression in hybrids. Theor Appl Genet. 2006 Nov; 113(7):1305-15. PMID: 16937154.
      Citations: 2     Fields:    Translation:AnimalsCells
    90. Liu Y, Lamkemeyer T, Jakob A, Mi G, Zhang F, Nordheim A, Hochholdinger F. Comparative proteome analyses of maize (Zea mays L.) primary roots prior to lateral root initiation reveal differential protein expression in the lateral root initiation mutant rum1. Proteomics. 2006 Aug; 6(15):4300-8. PMID: 16819721.
      Citations: 16     Fields:    Translation:Animals
    91. Sauer M, Dembinsky D, Hoecker N, Muthreich N, Saleem M, Liu Y, Hochholdinger F. Proteomic dissection of plant development. Proteomics. 2006 Jul; 6(14):4076-83. PMID: 16786485.
      Citations: 9     Fields:    
    92. Strnad M, Scanlon MJ, Mancuso S, Hochholdinger F, Palme K, Volkmann D, Menzel D, Baluska F, Schlicht M. Auxin immunolocalization implicates vesicular neurotransmitter-like mode of polar auxin transport in root apices. Plant Signal Behav. 2006 May; 1(3):122-33. PMID: 19521492; PMCID: PMC2635008.
      Citations: 36     Fields:    
    93. Sauer M, Jakob A, Nordheim A, Hochholdinger F. Proteomic analysis of shoot-borne root initiation in maize (Zea mays L.). Proteomics. 2006 Apr; 6(8):2530-41. PMID: 16521151.
      Citations: 19     Fields:    Translation:Animals
    94. Piepho HP, Keller B, Hoecker N, Hochholdinger F. Combining signals from spotted cDNA microarrays obtained at different scanning intensities. Bioinformatics. 2006 Apr 01; 22(7):802-7. PMID: 16418237.
      Citations: 8     Fields:    Translation:Animals
    95. Keller B, Piepho HP, Hochholdinger F, Hoecker N. Manifestation of heterosis during early maize (Zea mays L.) root development. Theor Appl Genet. 2006 Feb; 112(3):421-9. PMID: 16362278.
      Citations: 46     Fields:    Translation:Animals
    96. Hochholdinger F, Woll K, Guo L, Schnable PS. The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.). Proteomics. 2005 Dec; 5(18):4885-93. PMID: 16247731.
      Citations: 13     Fields:    Translation:Animals
    97. Woll K, Borsuk LA, Stransky H, Nettleton D, Schnable PS, Hochholdinger F. Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol. 2005 Nov; 139(3):1255-67. PMID: 16215225; PMCID: PMC1283763.
      Citations: 73     Fields:    Translation:AnimalsCells
    98. Wen TJ, Hochholdinger F, Sauer M, Bruce W, Schnable PS. The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiol. 2005 Jul; 138(3):1637-43. PMID: 15980192; PMCID: PMC1176433.
      Citations: 82     Fields:    Translation:AnimalsCells
    99. Keller B, Emrich K, Hoecker N, Sauer M, Hochholdinger F, Piepho HP. Designing a microarray experiment to estimate dominance in maize (Zea mays L.). Theor Appl Genet. 2005 Jun; 111(1):57-64. PMID: 15887039.
      Citations: 5     Fields:    Translation:Animals
    100. Hochholdinger F, Guo L, Schnable PS. Lateral roots affect the proteome of the primary root of maize (Zea mays L.). Plant Mol Biol. 2004 Oct; 56(3):397-412. PMID: 15604752.
      Citations: 15     Fields:    Translation:Animals
    101. Park WJ, Hochholdinger F, Gierl A. Release of the benzoxazinoids defense molecules during lateral- and crown root emergence in Zea mays. J Plant Physiol. 2004 Aug; 161(8):981-5. PMID: 15384410.
      Citations: 13     Fields:    Translation:Animals
    102. Woll K, Sauer M, Dembinsky D, Hochholdinger F. Genetic dissection of root formation in maize (Zea mays) reveals root-type specific developmental programmes. Ann Bot. 2004 Apr; 93(4):359-68. PMID: 14980975; PMCID: PMC4242335.
      Citations: 79     Fields:    Translation:Animals
    103. Schnable PS, Hochholdinger F, Nakazono M. Global expression profiling applied to plant development. Curr Opin Plant Biol. 2004 Feb; 7(1):50-6. PMID: 14732441.
      Citations: 31     Fields:    Translation:AnimalsCells
    104. Hochholdinger F, Guo L, Schnable PS. Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize. Plant J. 2004 Jan; 37(2):199-208. PMID: 14690504.
      Citations: 13     Fields:    Translation:AnimalsCells
    105. Park WJ, Sauer M, Woll K, Hochholdinger F. From weeds to crops: genetic analysis of root development in cereals. Trends Plant Sci. 2004 Jan; 9(1):42-8. PMID: 14729218.
      Citations: 106     Fields:    Translation:Animals
    106. Kampfer S, Windegger M, Hochholdinger F, Schwaiger W, Pestell RG, Baier G, Grunicke HH, Uberall F. Protein kinase C isoforms involved in the transcriptional activation of cyclin D1 by transforming Ha-Ras. J Biol Chem. 2001 Nov 16; 276(46):42834-42. PMID: 11551901.
      Citations: 23     Fields:    Translation:HumansAnimalsCells
    107. Bauer B, Fresser F, Hochholdinger F, Spitaler M, Simm A, Uberall F, Schraven B, Baier G, Krumb?ck N. Complex formation and cooperation of protein kinase C theta and Akt1/protein kinase B alpha in the NF-kappa B transactivation cascade in Jurkat T cells. J Biol Chem. 2001 Aug 24; 276(34):31627-34. PMID: 11410591.
      Citations: 32     Fields:    Translation:HumansCells
    108. Park WJ, Feix GH, Hochholdinger F. Cooperative action of SLR1 and SLR2 is required for lateral root-specific cell elongation in maize. Plant Physiol. 2001 Mar; 125(3):1529-39. PMID: 11244131; PMCID: PMC65630.
      Citations: 18     Fields:    Translation:Animals
    109. Hellbert K, Kampfer S, Maly K, Hochholdinger F, Mwanjewe J, Baier G, Uberall F, Grunicke HH. Implication of atypical protein kinase C isozymes lambda and zeta in Ras mediated reorganization of the actin cytoskeleton and cyclin D1-induction. Adv Enzyme Regul. 2000; 40:49-62. PMID: 10828345.
      Citations: 6     Fields:    Translation:AnimalsCells
    110. Hochholdinger F, Baier G, Nogalo A, Bauer B, Grunicke HH, Uberall F. Novel membrane-targeted ERK1 and ERK2 chimeras which act as dominant negative, isotype-specific mitogen-activated protein kinase inhibitors of Ras-Raf-mediated transcriptional activation of c-fos in NIH 3T3 cells. Mol Cell Biol. 1999 Dec; 19(12):8052-65. PMID: 10567531; PMCID: PMC84890.
      Citations: 10     Fields:    Translation:HumansAnimalsCells
    111. Feix G, Hochholdinger F. Early post-embryonic root formation is specifically affected in the maize mutant lrt1. Plant J. 1998 Oct; 16(2):247-55. PMID: 22507137.
      Citations: 37     Fields:    
    112. Tinhofer I, Maly K, Dietl P, Hochholdinger F, Mayr S, Obermeier A, Grunicke HH. Differential Ca2+ signaling induced by activation of the epidermal growth factor and nerve growth factor receptors. J Biol Chem. 1996 Nov 29; 271(48):30505-9. PMID: 8940018.
      Citations: 10     Fields:    Translation:AnimalsCells

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