Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

e.g. CCGA
(min 2 characters)

Claudia Knief

Prof.
University of Bonn
Faculty of Agriculture, INRES
Nussallee 13, 53115 Bonn, Germany
Bonn 53115
+49 228 732555
Download vCard

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Becker MF, Klueken AM, Knief C. Effects of above ground pathogen infection and fungicide application on the root-associated microbiota of apple saplings. Environ Microbiome. 2023 May 27; 18(1):43. PMID: 37245023; PMCID: PMC10225105.
      Citations:    
    2. Becker MF, Knief C, Hellmann M. Spatio-temporal variation in the root-associated microbiota of orchard-grown apple trees. Environ Microbiome. 2022 Jun 17; 17(1):31. PMID: 35715810; PMCID: PMC9205072.
      Citations: 3     
    3. Castro-Nallar E, Amelung W, Knief C, Klysubun W, Fuentes B, Choque A, G?mez F, Alarc?n J, Arenas F, Contreras D, M?rchen R, Moradi G, Klumpp E, Saavedra CP, Prietzel J, Remonsellez F, Bol R. Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert. Front Microbiol. 2021; 12:794743. PMID: 35197940; PMCID: PMC8859261.
      Citations: 2     
    4. Tarkka MT, Bonkowski M, Ge T, Knief C, Razavi BS, Vetterlein D. Editorial: Rhizosphere Spatiotemporal Organisation. Front Plant Sci. 2021; 12:795136. PMID: 34868189; PMCID: PMC8639225.
      Citations:    
    5. Blagodatskaya E, Tarkka M, Knief C, Peth S, Schmidt V, Spielvogel S, Uteau D, Weber M, Razavi BS, Koller R. Bridging Microbial Functional Traits With Localized Process Rates at Soil Interfaces. Front Microbiol. 2021; 12:625697. PMID: 34777265; PMCID: PMC8581545.
      Citations:    
    6. Frindte K, Cui J, Zhang P, Schulze-Lefert P, Knief C, Schulz M, Sch?tz V, Hacquard S, D?rmann P. Differential Impact of Plant Secondary Metabolites on the Soil Microbiota. Front Microbiol. 2021; 12:666010. PMID: 34122379; PMCID: PMC8195599.
      Citations: 17     
    7. Bonkowski M, Tarkka M, Razavi BS, Schmidt H, Blagodatskaya E, Yu P, Knief C, Hochholdinger F, Vetterlein D, Koller R. Spatiotemporal Dynamics of Maize (Zea mays L.) Root Growth and Its Potential Consequences for the Assembly of the Rhizosphere Microbiota. Front Microbiol. 2021; 12:619499. PMID: 33815308; PMCID: PMC8010349.
      Citations: 6     
    8. Frindte K, Zoche SA, Knief C. Development of a Distinct Microbial Community Upon First Season Crop Change in Soils of Long-Term Managed Maize and Rice Fields. Front Microbiol. 2020; 11:588198. PMID: 33240244; PMCID: PMC7680734.
      Citations: 2     
    9. Frindte K, Lehndorff E, Werner K, Khormali F, Knief C, Vlaminck S, Kehl M. Evidence for signatures of ancient microbial life in paleosols. Sci Rep. 2020 10 08; 10(1):16830. PMID: 33033361; PMCID: PMC7545160.
      Citations: 2     Fields:    Translation:CellsPHPublic Health
    10. Knief C. Diversity of Methane Cycling Microorganisms in Soils and Their Relation to Oxygen. Curr Issues Mol Biol. 2019; 33:23-56. PMID: 31166184.
      Citations: 12     Fields:    Translation:CellsPHPublic Health
    11. Frindte K, Pape R, Werner K, Knief C, L?ffler J. Temperature and soil moisture control microbial community composition in an arctic-alpine ecosystem along elevational and micro-topographic gradients. ISME J. 2019 08; 13(8):2031-2043. PMID: 30952996; PMCID: PMC6776025.
      Citations: 21     Fields:    Translation:PHPublic Health
    12. Maarastawi SA, Frindte K, Linnartz M, Knief C. Crop Rotation and Straw Application Impact Microbial Communities in Italian and Philippine Soils and the Rhizosphere of Zea mays. Front Microbiol. 2018; 9:1295. PMID: 29963033; PMCID: PMC6013709.
      Citations: 20     
    13. Frindte K, Maarastawi SA, Hamacher J, Knief C, Lipski A. Characterization of the first rice paddy cluster I isolate, Methyloterricola oryzae gen. nov., sp. nov. and amended description of Methylomagnum ishizawai. Int J Syst Evol Microbiol. 2017 Nov; 67(11):4507-4514. PMID: 28984554.
      Citations: 10     Fields:    Translation:AnimalsCells
    14. Murrell JC, Kolb S, Horn MA, Knief C. Editorial: The Impact of Microorganisms on Consumption of Atmospheric Trace Gases. Front Microbiol. 2017; 8:1856. PMID: 29033914; PMCID: PMC5625088.
      Citations: 2     
    15. Frindte K, Kalyuzhnaya MG, Dunfield PF, Jetten MSM, Khmelenina VN, Klotz MG, Murrell JC, Op den Camp HJM, Sakai Y, Semrau JD, Shapiro N, DiSpirito AA, Stein LY, Trotsenko YA, Woyke T, Knief C, Bringel F, Svenning MM, Vuilleumier S. Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems. Genome Announc. 2017 Aug 17; 5(33). PMID: 28818885; PMCID: PMC5604758.
      Citations: 1     
    16. Ueda Y, Frindte K, Knief C, Ashrafuzzaman M, Frei M. Effects of Elevated Tropospheric Ozone Concentration on the Bacterial Community in the Phyllosphere and Rhizoplane of Rice. PLoS One. 2016; 11(9):e0163178. PMID: 27643794; PMCID: PMC5028031.
      Citations: 8     Fields:    Translation:AnimalsCells
    17. Flynn JD, Hirayama H, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Khmelenina VN, Trotsenko YA, Murrell JC, Semrau JD, Stein LY, Kyrpides N, Shapiro N, Woyke T, DiSpirito AA, Kalyuzhnaya MG, Svenning MM, Bringel F, Vuilleumier S. Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems. Genome Announc. 2016 Jan 21; 4(1). PMID: 26798114; PMCID: PMC4722281.
      Citations: 7     
    18. Knief C. Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker. Front Microbiol. 2015; 6:1346. PMID: 26696968; PMCID: PMC4678205.
      Citations: 145     
    19. Sharp CE, Smirnova AV, Kalyuzhnaya MG, Hirayama H, Jetten MS, Khmelenina VN, Klotz MG, Knief C, Kyrpides N, Op den Camp HJ, Reshetnikov AS, Sakai Y, Shapiro N, Trotsenko YA, Woyke T, Dunfield PF, Bringel F, Vuilleumier S. Draft Genome Sequence of the Moderately Halophilic Methanotroph Methylohalobius crimeensis Strain 10Ki. Genome Announc. 2015 Jun 11; 3(3). PMID: 26067976; PMCID: PMC4463540.
      Citations: 2     
    20. Hamilton R, Kits KD, Ramonovskaya VA, Rozova ON, Yurimoto H, Iguchi H, Khmelenina VN, Sakai Y, Dunfield PF, Klotz MG, Knief C, Op den Camp HJ, Jetten MS, Shapiro N, Woyke T, Trotsenko YA, Stein LY, Kalyuzhnaya MG, Bringel F, Vuilleumier S, Svenning MM. Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems. Genome Announc. 2015 Jun 04; 3(3). PMID: 26044417; PMCID: PMC4457054.
      Citations: 13     
    21. Knief C. Analysis of plant microbe interactions in the era of next generation sequencing technologies. Front Plant Sci. 2014; 5:216. PMID: 24904612; PMCID: PMC4033234.
      Citations: 71     
    22. Khmelenina VN, Beck DA, Munk C, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Scholz M, Teshima H, Xu Y, Chain P, Bringel F, Dispirito A, Dunfield P, Jetten MS, Klotz MG, Knief C, Murrell JC, Op den Camp HJ, Sakai Y, Semrau J, Svenning M, Stein LY, Trotsenko YA, Kalyuzhnaya MG, Vuilleumier S. Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium. Genome Announc. 2013 Jun 27; 1(4). PMID: 23814105; PMCID: PMC3695433.
      Citations: 19     
    23. Marx CJ, Chistoserdova L, Moulin L, Farhan Ul Haque M, Fleischman DE, Gruffaz C, Jourand P, Knief C, Lee MC, Muller EE, Nadalig T, Roselli S, Russ L, Goodwin LA, Ivanova N, Kyrpides N, Land ML, Mikhailova N, Nolan M, Woyke T, Stolyar S, Vorholt JA, Bringel F, Peyraud R, Lajus A, M?digue C, Vuilleumier S. Complete genome sequences of six strains of the genus Methylobacterium. J Bacteriol. 2012 Sep; 194(17):4746-8. PMID: 22887658; PMCID: PMC3415506.
      Citations: 44     Fields:    Translation:Cells
    24. Knief C, Chaffron S, Stark M, Innerebner G, Wassmann R, von Mering C, Vorholt JA, Delmotte N. Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J. 2012 Jul; 6(7):1378-90. PMID: 22189496; PMCID: PMC3379629.
      Citations: 208     Fields:    Translation:AnimalsCells
    25. Knief C, Dengler V, Bodelier PL, Vorholt JA. Characterization of Methylobacterium strains isolated from the phyllosphere and description of Methylobacterium longum sp. nov. Antonie Van Leeuwenhoek. 2012 Jan; 101(1):169-83. PMID: 21986935.
      Citations: 10     Fields:    Translation:Cells
    26. Knief C, Vorholt JA, Delmotte N. Bacterial adaptation to life in association with plants - A proteomic perspective from culture to in situ conditions. Proteomics. 2011 Aug; 11(15):3086-105. PMID: 21548095.
      Citations: 23     Fields:    Translation:Animals
    27. Innerebner G, Knief C, Vorholt JA. Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system. Appl Environ Microbiol. 2011 May; 77(10):3202-10. PMID: 21421777; PMCID: PMC3126462.
      Citations: 194     Fields:    Translation:AnimalsCellsPHPublic Health
    28. Knief C, Frances L, Vorholt JA. Competitiveness of diverse Methylobacterium strains in the phyllosphere of Arabidopsis thaliana and identification of representative models, including M. extorquens PA1. Microb Ecol. 2010 Aug; 60(2):440-52. PMID: 20700590.
      Citations: 45     Fields:    Translation:AnimalsCells
    29. Ahrens CH, Knief C, Qeli E, Koch M, Fischer HM, Vorholt JA, Hennecke H, Pessi G, Delmotte N. An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules. Proteomics. 2010 Apr; 10(7):1391-400. PMID: 20104621.
      Citations: 45     Fields:    Translation:Cells
    30. Knief C, Ramette A, Frances L, Alonso-Blanco C, Vorholt JA. Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J. 2010 Jun; 4(6):719-28. PMID: 20164863.
      Citations: 113     Fields:    Translation:AnimalsCells
    31. Knief C, Chaffron S, Innerebner G, Roschitzki B, Schlapbach R, von Mering C, Vorholt JA, Delmotte N. Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc Natl Acad Sci U S A. 2009 Sep 22; 106(38):16428-33. PMID: 19805315; PMCID: PMC2738620.
      Citations: 268     Fields:    Translation:AnimalsCells
    32. Knief C, Frances L, Cantet F, Vorholt JA. Cultivation-independent characterization of methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis. Appl Environ Microbiol. 2008 Apr; 74(7):2218-28. PMID: 18263752; PMCID: PMC2292606.
      Citations: 21     Fields:    Translation:CellsPHPublic Health
    33. Kolb S, Bodelier PL, Dunfield PF, Knief C, Lipski A. The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration. Environ Microbiol. 2006 Feb; 8(2):321-33. PMID: 16423018.
      Citations: 25     Fields:    Translation:CellsPHPublic Health
    34. Sy A, Timmers AC, Knief C, Vorholt JA. Methylotrophic metabolism is advantageous for Methylobacterium extorquens during colonization of Medicago truncatula under competitive conditions. Appl Environ Microbiol. 2005 Nov; 71(11):7245-52. PMID: 16269765; PMCID: PMC1287603.
      Citations: 84     Fields:    Translation:AnimalsCells
    35. Dunfield PF, Knief C. Response and adaptation of different methanotrophic bacteria to low methane mixing ratios. Environ Microbiol. 2005 Sep; 7(9):1307-17. PMID: 16104854.
      Citations: 46     Fields:    Translation:CellsPHPublic Health
    36. Knief C, Dunfield PF, Conrad R, Kolb S. Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils. Environ Microbiol. 2005 Aug; 7(8):1150-61. PMID: 16011752.
      Citations: 49     Fields:    Translation:AnimalsCellsPHPublic Health
    37. Dedysh SN, Knief C, Dunfield PF. Methylocella species are facultatively methanotrophic. J Bacteriol. 2005 Jul; 187(13):4665-70. PMID: 15968078; PMCID: PMC1151763.
      Citations: 70     Fields:    Translation:Cells
    38. Knief C, Vanitchung S, Harvey NW, Conrad R, Dunfield PF, Chidthaisong A. Diversity of methanotrophic bacteria in tropical upland soils under different land uses. Appl Environ Microbiol. 2005 Jul; 71(7):3826-31. PMID: 16000794; PMCID: PMC1169035.
      Citations: 16     Fields:    Translation:AnimalsCellsPHPublic Health
    39. Jaatinen K, Knief C, Dunfield PF, Fritze H, Yrj?l? K. Methanotrophic bacteria in boreal forest soil after fire. FEMS Microbiol Ecol. 2004 Nov 01; 50(3):195-202. PMID: 19712360.
      Citations: 11     Fields:    Translation:AnimalsCellsPHPublic Health
    40. Dunfield PF, Knief C, Lipski A. Diversity and activity of methanotrophic bacteria in different upland soils. Appl Environ Microbiol. 2003 Nov; 69(11):6703-14. PMID: 14602631; PMCID: PMC262299.
      Citations: 63     Fields:    Translation:CellsPHPublic Health
    41. Altendorf K, Knief C, Lipski A. Linking autotrophic activity in environmental samples with specific bacterial taxa by detection of 13C-labelled fatty acids. Environ Microbiol. 2003 Nov; 5(11):1155-67. PMID: 14641595.
      Citations: 13     Fields:    Translation:CellsPHPublic Health
    42. Knief C, Stubner S, Conrad R, Kolb S. Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays. Appl Environ Microbiol. 2003 May; 69(5):2423-9. PMID: 12732507; PMCID: PMC154495.
      Citations: 106     Fields:    Translation:AnimalsCellsPHPublic Health

    Related

    Topics (122)

    Explore

    Co-Authors (1)

    Explore

    Similar People (60)

    Explore
    © 2022 Next Generation Sequencing Competence Network (NGS-CN) | Imprint | Privacy