Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

e.g. CCGA
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Tal Dagan

Prof.
Christian-Albrechts-University Kiel
Institute for General Microbiology
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Khachaturyan M, Reusch TBH, Dagan T. Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant. Genome Biol Evol. 2023 Sep 04; 15(9). PMID: 37708410; PMCID: PMC10538256.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    2. Vel?zquez-Su?rez C, Springstein BL, Nieves-Mori?n M, Helbig AO, Kieninger AK, Maldener I, N?rnberg DJ, Stucken K, Luque I, Dagan T, Herrero A. SepT, a novel protein specific to multicellular cyanobacteria, influences peptidoglycan growth and septal nanopore formation in Anabaena sp. PCC 7120. mBio. 2023 Aug 31; e0098323. PMID: 37650636.
      Citations:    Fields:    Translation:Cells
    3. Garo?a A, Santer M, H?lter NF, Uecker H, Dagan T. Segregational drift hinders the evolution of antibiotic resistance on polyploid replicons. PLoS Genet. 2023 08; 19(8):e1010829. PMID: 37535631; PMCID: PMC10399855.
      Citations: 2     Fields:    Translation:HumansCells
    4. Yu L, Khachaturyan M, Matschiner M, Healey A, Bauer D, Cameron B, Cusson M, Emmett Duffy J, Joel Fodrie F, Gill D, Grimwood J, Hori M, Hovel K, Hughes AR, Jahnke M, Jenkins J, Keymanesh K, Kruschel C, Mamidi S, Menning DM, Moksnes PO, Nakaoka M, Pennacchio C, Reiss K, Rossi F, Ruesink JL, Schultz ST, Talbot S, Unsworth R, Ward DH, Dagan T, Schmutz J, Eisen JA, Stachowicz JJ, Van de Peer Y, Olsen JL, Reusch TBH. Author Correction: Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nat Plants. 2023 Aug; 9(8):1370. PMID: 37550373; PMCID: PMC10435385.
      Citations:    Fields:    
    5. Yu L, Khachaturyan M, Matschiner M, Healey A, Bauer D, Cameron B, Cusson M, Emmett Duffy J, Joel Fodrie F, Gill D, Grimwood J, Hori M, Hovel K, Hughes AR, Jahnke M, Jenkins J, Keymanesh K, Kruschel C, Mamidi S, Menning DM, Moksnes PO, Nakaoka M, Pennacchio C, Reiss K, Rossi F, Ruesink JL, Schultz ST, Talbot S, Unsworth R, Ward DH, Dagan T, Schmutz J, Eisen JA, Stachowicz JJ, Olsen JL, Reusch TBH, Van de Peer Y. Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina). Nat Plants. 2023 08; 9(8):1207-1220. PMID: 37474781; PMCID: PMC10435387.
      Citations: 3     Fields:    Translation:Animals
    6. Tria FDK, Landan G, Picazo DR, Dagan T. Phylogenomic Testing of Root Hypotheses. Genome Biol Evol. 2023 06 01; 15(6). PMID: 37247390; PMCID: PMC10262964.
      Citations:    Fields:    Translation:AnimalsCells
    7. Marcus E, Dagan T, Asli W, Ben-Ami F. Out of the 'host' box: extreme off-host conditions alter the infectivity and virulence of a parasitic bacterium. Philos Trans R Soc Lond B Biol Sci. 2023 03 27; 378(1873):20220015. PMID: 36744562; PMCID: PMC9900709.
      Citations: 1     Fields:    Translation:AnimalsCells
    8. Wein T, Dagan T. Plasmid evolution. Curr Biol. 2022 Oct 24; 32(20):4547. PMID: 36283346.
      Citations:    Fields:    
    9. Santer M, Kupczok A, Dagan T, Uecker H. Fixation dynamics of beneficial alleles in prokaryotic polyploid chromosomes and plasmids. Genetics. 2022 09 30; 222(2). PMID: 35959975; PMCID: PMC9526072.
      Citations: 2     Fields:    Translation:HumansCells
    10. Nies F, Springstein BL, Hanke DM, Dagan T. Natural Competence in the Filamentous, Heterocystous Cyanobacterium Chlorogloeopsis fritschii PCC 6912. mSphere. 2022 08 31; 7(4):e0099721. PMID: 35862819; PMCID: PMC9429965.
      Citations: 1     Fields:    Translation:Cells
    11. Romero Picazo D, Werner A, Dagan T, Kupczok A. Pangenome Evolution in Environmentally Transmitted Symbionts of Deep-Sea Mussels Is Governed by Vertical Inheritance. Genome Biol Evol. 2022 07 02; 14(7). PMID: 35731940; PMCID: PMC9260185.
      Citations: 3     Fields:    Translation:AnimalsCells
    12. Woehle C, Roy AS, Glock N, Michels J, Wein T, Weissenbach J, Hiebenthal C, Gorb SN, Dagan T, Romero D, Sch?nfeld J. Denitrification in foraminifera has an ancient origin and is complemented by associated bacteria. Proc Natl Acad Sci U S A. 2022 06 21; 119(25):e2200198119. PMID: 35704763; PMCID: PMC9231491.
      Citations: 2     Fields:    Translation:AnimalsCells
    13. Romero Picazo D, Dagan T, Garo?a A, H?lter NF. Segregational Drift Constrains the Evolutionary Rate of Prokaryotic Plasmids. Mol Biol Evol. 2021 12 09; 38(12):5610-5624. PMID: 34550379; PMCID: PMC8662611.
      Citations: 6     Fields:    Translation:Cells
    14. Wang Y, Batra A, Schulenburg H, Dagan T. Gene sharing among plasmids and chromosomes reveals barriers for antibiotic resistance gene transfer. Philos Trans R Soc Lond B Biol Sci. 2022 01 17; 377(1842):20200467. PMID: 34839702; PMCID: PMC8628082.
      Citations: 9     Fields:    Translation:Cells
    15. Wein T, Wang Y, Barz M, Hammerschmidt K, Dagan T, St?cker FT. Essential gene acquisition destabilizes plasmid inheritance. PLoS Genet. 2021 07; 17(7):e1009656. PMID: 34252089; PMCID: PMC8297927.
      Citations: 8     Fields:    Translation:Cells
    16. Soluch R, Romero Picazo D, Stukenbrock EH, Dagan T, H?lter NF, ?zkurt E. Colonization dynamics of Pantoea agglomerans in the wheat root habitat. Environ Microbiol. 2021 04; 23(4):2260-2273. PMID: 33587819.
      Citations: 5     Fields:    Translation:AnimalsCells
    17. Hammerschmidt K, Landan G, Alcorta J, Dagan T, Domingues K?mmel Tria F. The Order of Trait Emergence in the Evolution of Cyanobacterial Multicellularity. Genome Biol Evol. 2021 02 03; 13(2). PMID: 33231627; PMCID: PMC7937182.
      Citations: 12     Fields:    Translation:Cells
    18. Springstein BL, Woehle C, Weissenbach J, Theune ML, Dagan T, Stucken K, N?rnberg DJ, Helbig AO, Maldener I. Two novel heteropolymer-forming proteins maintain the multicellular shape of the cyanobacterium Anabaena sp. PCC 7120. FEBS J. 2021 05; 288(10):3197-3216. PMID: 33205554.
      Citations: 3     Fields:    Translation:Cells
    19. Hassani MA, Dagan T, Stukenbrock EH, ?zkurt E, Sesiz U, K?nzel S, ?zkan H. Seed-Derived Microbial Colonization of Wild Emmer and Domesticated Bread Wheat (Triticum dicoccoides and T. aestivum) Seedlings Shows Pronounced Differences in Overall Diversity and Composition. mBio. 2020 11 17; 11(6). PMID: 33203759; PMCID: PMC7683402.
      Citations: 23     Fields:    Translation:AnimalsCells
    20. Dagan T, Garo?a A. Darwinian individuality of extrachromosomal genetic elements calls for population genetics tinkering. Environ Microbiol Rep. 2021 02; 13(1):22-26. PMID: 33034073.
      Citations: 3     Fields:    Translation:Cells
    21. Wein T, Dagan T. Plasmid evolution. Curr Biol. 2020 10 05; 30(19):R1158-R1163. PMID: 33022260.
      Citations: 13     Fields:    Translation:Cells
    22. Godfroid M, Dagan T, Merker M, Kohl TA, Maurer FP, Niemann S, Kupczok A, Diel R. Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak. PLoS Pathog. 2020 09; 16(9):e1008357. PMID: 32997707; PMCID: PMC7549793.
      Citations: 16     Fields:    Translation:HumansCellsPHPublic Health
    23. Wein T, Effe J, Dagan T, H?lter NF, Garo?a A. Intracellular Competitions Reveal Determinants of Plasmid Evolutionary Success. Front Microbiol. 2020; 11:2062. PMID: 33013753; PMCID: PMC7500096.
      Citations: 6     
    24. Wein T, Wang Y, Hammerschmidt K, Dagan T, H?lter NF. Antibiotics Interfere with the Evolution of Plasmid Stability. Curr Biol. 2020 10 05; 30(19):3841-3847.e4. PMID: 32795438.
      Citations: 16     Fields:    Translation:Cells
    25. Svetlitsky D, Dagan T, Ziv-Ukelson M. Discovery of multi-operon colinear syntenic blocks in microbial genomes. Bioinformatics. 2020 07 01; 36(Suppl_1):i21-i29. PMID: 32657415; PMCID: PMC7355258.
      Citations: 6     Fields:    
    26. Yu L, Bayer T, Dagan T, Reusch TBH, Bostr?m C, Franzenburg S. Somatic genetic drift and multilevel selection in a clonal seagrass. Nat Ecol Evol. 2020 07; 4(7):952-962. PMID: 32393866.
      Citations: 24     Fields:    
    27. Stucken K, Springstein BL, Ar?valo S, Helbig AO, Herrero A, Flores E, Dagan T. A novel septal protein of multicellular heterocystous cyanobacteria is associated with the divisome. Mol Microbiol. 2020 06; 113(6):1140-1154. PMID: 32039534.
      Citations: 10     Fields:    Translation:Cells
    28. Stucken K, Springstein BL, Woehle C, Weissenbach J, Helbig AO, Dagan T. Identification and characterization of novel filament-forming proteins in cyanobacteria. Sci Rep. 2020 02 05; 10(1):1894. PMID: 32024928; PMCID: PMC7002697.
      Citations: 7     Fields:    Translation:Cells
    29. Wein T, Dagan T, St?cker FT, H?lter NF. Quantification of Plasmid-Mediated Antibiotic Resistance in an Experimental Evolution Approach. J Vis Exp. 2019 12 14; (154). PMID: 31885375.
      Citations: 1     Fields:    
    30. Wein T, Dagan T. The Effect of Population Bottleneck Size and Selective Regime on Genetic Diversity and Evolvability in Bacteria. Genome Biol Evol. 2019 11 01; 11(11):3283-3290. PMID: 31688900; PMCID: PMC7145630.
      Citations: 11     Fields:    Translation:Cells
    31. Dagan T, Dierking K, Domin H, Fraune S, von Frieling J, Hentschel U, Heinsen FA, Jahn MT, Jaspers C, Kissoyan KAB, Langfeldt D, Rehman A, Reusch TBH, Roeder T, Schmitz RA, Schulenburg H, Soluch R, Sommer F, Rosenstiel P, Franke A, Bosch T, Rausch P, R?hlemann M, Hermes BM, Doms S, H?ppner M, Stukenbrock E, Weiland-Br?uer N, Baines JF. Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome. 2019 09 14; 7(1):133. PMID: 31521200; PMCID: PMC6744666.
      Citations: 67     Fields:    Translation:HumansAnimalsCells
    32. Romero Picazo D, Dagan T, Ansorge R, Petersen JM, Dubilier N, Kupczok A. Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated. ISME J. 2019 12; 13(12):2954-2968. PMID: 31395952; PMCID: PMC6863903.
      Citations: 17     Fields:    Translation:AnimalsCells
    33. Kupczok A, Dagan T. Rates of Molecular Evolution in a Marine Synechococcus Phage Lineage. Viruses. 2019 08 06; 11(8). PMID: 31390807; PMCID: PMC6722890.
      Citations: 6     Fields:    Translation:Cells
    34. Dagan T, Hassani MA, ?zkurt E, Seybold H, Stukenbrock EH. Interactions and Coadaptation in Plant Metaorganisms. Annu Rev Phytopathol. 2019 08 25; 57:483-503. PMID: 31348865.
      Citations: 9     Fields:    Translation:Animals
    35. Wein T, Romero Picazo D, Blow F, Woehle C, Jami E, Reusch TBH, Dagan T, Martin WF. Currency, Exchange, and Inheritance in the Evolution of Symbiosis. Trends Microbiol. 2019 10; 27(10):836-849. PMID: 31257129.
      Citations: 11     Fields:    Translation:AnimalsCells
    36. Wein T, Mizrahi I, Dagan T, H?lter NF. Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance. Nat Commun. 2019 06 13; 10(1):2595. PMID: 31197163; PMCID: PMC6565834.
      Citations: 64     Fields:    Translation:Cells
    37. Svetlitsky D, Dagan T, Chalifa-Caspi V, Ziv-Ukelson M. CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes. Bioinformatics. 2019 05 15; 35(10):1634-1643. PMID: 30321308.
      Citations: 5     Fields:    
    38. Kaminski Strauss S, Schirman D, Jona G, Brooks AN, Kunjapur AM, Nguyen Ba AN, Flint A, Solt A, Mershin A, Dixit A, Yona AH, Busby BP, Hennig BP, Schraivogel D, Schultz D, Wernick DG, Agashe D, Levi D, Zabezhinsky D, Russ D, Sass E, Tamar E, Herz E, Levy ED, Church GM, Yelin I, Nachman I, Gerst JE, Georgeson JM, Adamala KP, Steinmetz LM, Ralser M, Klutstein M, Desai MM, Walunjkar N, Yin N, Aharon Hefetz N, Jakimo N, Snitser O, Adini O, Kumar P, Soo Hoo Smith R, Zeidan R, Hazan R, Rak R, Kishony R, Johnson S, Nouriel S, Vonesch SC, Foster S, Dagan T, Wein T, Karydis T, Wannier TM, Stiles T, Olin-Sandoval V, Mueller WF, Bar-On YM, Dahan O, Pilpel Y, Cs?rgo B, P?l C, R?bsam M. Evolthon: A community endeavor to evolve lab evolution. PLoS Biol. 2019 03; 17(3):e3000182. PMID: 30925180; PMCID: PMC6440615.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    39. Ilhan J, Kupczok A, Woehle C, Wein T, Rosenstiel P, Landan G, Mizrahi I, Dagan T, H?lter NF. Segregational Drift and the Interplay between Plasmid Copy Number and Evolvability. Mol Biol Evol. 2019 03 01; 36(3):472-486. PMID: 30517696; PMCID: PMC6389322.
      Citations: 20     Fields:    Translation:Cells
    40. Glock N, Roy AS, Wein T, Weissenbach J, Revsbech NP, Clemens D, Sommer S, Dagan T, Romero D, H?gslund S. Metabolic preference of nitrate over oxygen as an electron acceptor in foraminifera from the Peruvian oxygen minimum zone. Proc Natl Acad Sci U S A. 2019 02 19; 116(8):2860-2865. PMID: 30728294; PMCID: PMC6386669.
      Citations: 16     Fields:    
    41. Woehle C, Roy AS, Glock N, Wein T, Weissenbach J, Rosenstiel P, Hiebenthal C, Michels J, Dagan T, Sch?nfeld J. A Novel Eukaryotic Denitrification Pathway in Foraminifera. Curr Biol. 2018 08 20; 28(16):2536-2543.e5. PMID: 30078568; PMCID: PMC6783311.
      Citations: 24     Fields:    Translation:AnimalsCells
    42. Godfroid M, Dagan T, Kupczok A. Recombination Signal in Mycobacterium tuberculosis Stems from Reference-guided Assemblies and Alignment Artefacts. Genome Biol Evol. 2018 08 01; 10(8):1920-1926. PMID: 30010866; PMCID: PMC6086087.
      Citations: 15     Fields:    Translation:Cells
    43. Kupczok A, Neve H, Huang KD, Hoeppner MP, Heller KJ, Franz CMAP, Dagan T. Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades. Mol Biol Evol. 2018 05 01; 35(5):1147-1159. PMID: 29688542; PMCID: PMC5913663.
      Citations: 37     Fields:    Translation:Cells
    44. Wein T, Dagan T, Fraune S, Bosch TCG, Reusch TBH, H?lter NF. Carrying Capacity and Colonization Dynamics of Curvibacter in the Hydra Host Habitat. Front Microbiol. 2018; 9:443. PMID: 29593687; PMCID: PMC5861309.
      Citations: 18     
    45. Bang C, Dagan T, Deines P, Fraune S, Hirt H, Lachnit T, Picazo D, Pogoreutz C, Saad MM, Schmitz RA, Schulenburg H, Voolstra CR, Ziegler M, Bosch TCG, Dubilier N, Duschl WJ, Hentschel U, H?lter N, Pita L, R?decker N, Weiland-Br?uer N. Metaorganisms in extreme environments: do microbes play a role in organismal adaptation? Zoology (Jena). 2018 04; 127:1-19. PMID: 29599012.
      Citations: 62     Fields:    Translation:Animals
    46. Koch R, Kupczok A, Stucken K, Ilhan J, Hammerschmidt K, Dagan T. Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria. BMC Evol Biol. 2017 08 31; 17(1):209. PMID: 28859625; PMCID: PMC5580265.
      Citations: 11     Fields:    Translation:Cells
    47. Landan G, Dagan T, Tria FDK. Phylogenetic rooting using minimal ancestor deviation. Nat Ecol Evol. 2017 06 19; 1:193. PMID: 29388565.
      Citations: 87     Fields:    
    48. Ilhan J, Wein T, Kadibalban AS, Hammerschmidt K, Dagan T, H?lter N. An evolutionary perspective on plasmid lifestyle modes. Curr Opin Microbiol. 2017 Aug; 38:74-80. PMID: 28538166.
      Citations: 43     Fields:    
    49. Woehle C, Dagan T, Landan G, Vardi A, Rosenwasser S. Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis. Nat Plants. 2017 May 15; 3:17066. PMID: 28504699; PMCID: PMC5438061.
      Citations: 11     Fields:    Translation:AnimalsCells
    50. Weissenbach J, Ilhan J, Bogumil D, Stucken K, Dagan T, H?lter N. Evolution of Chaperonin Gene Duplication in Stigonematalean Cyanobacteria (Subsection V). Genome Biol Evol. 2017 01 01; 9(1):241-252. PMID: 28082600; PMCID: PMC5381637.
      Citations: 4     Fields:    Translation:Cells
    51. Popa O, Landan G, Dagan T. Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction. ISME J. 2017 02; 11(2):543-554. PMID: 27648812; PMCID: PMC5183456.
      Citations: 37     Fields:    Translation:Cells
    52. Kadibalban AS, Bogumil D, Landan G, Dagan T. DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes. Genome Biol Evol. 2016 06 03; 8(5):1590-9. PMID: 27189986; PMCID: PMC4898814.
      Citations: 14     Fields:    Translation:Cells
    53. Kupczok A, Landan G, Dagan T. The Contribution of Genetic Recombination to CRISPR Array Evolution. Genome Biol Evol. 2015 Jun 16; 7(7):1925-39. PMID: 26085541; PMCID: PMC4524480.
      Citations: 17     Fields:    Translation:Cells
    54. Dagan T, McInerney JO, Bapteste E, Martin WF. SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report. Genome Biol Evol. 2014 Aug 12; 6(9):2206-9. PMID: 25115940; PMCID: PMC4202314.
      Citations:    Fields:    Translation:Cells
    55. Bogumil D, Alvarez-Ponce D, Landan G, McInerney JO, Dagan T. Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis. Mol Biol Evol. 2014 Feb; 31(2):410-8. PMID: 24188869; PMCID: PMC3907059.
      Citations: 10     Fields:    Translation:AnimalsCells
    56. Stucken K, Koch R, Dagan T. Cyanobacterial defense mechanisms against foreign DNA transfer and their impact on genetic engineering. Biol Res. 2013; 46(4):373-82. PMID: 24510140.
      Citations: 21     Fields:    Translation:Cells
    57. Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, Martin WF, Dagan T, P?hler A. Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids. Genome Biol Evol. 2013; 5(1):31-44. PMID: 23221676; PMCID: PMC3595030.
      Citations: 83     Fields:    Translation:AnimalsCells
    58. Dagan T, Bogumil D. Cumulative impact of chaperone-mediated folding on genome evolution. Biochemistry. 2012 Dec 18; 51(50):9941-53. PMID: 23167595.
      Citations: 28     Fields:    Translation:HumansAnimalsCells
    59. Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF, Nelson-Sathi S. Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proc Natl Acad Sci U S A. 2012 Dec 11; 109(50):20537-42. PMID: 23184964; PMCID: PMC3528564.
      Citations: 123     Fields:    Translation:Cells
    60. Heinz E, Williams TA, Nakjang S, Swan DC, Goldberg AV, Harris SR, Weinmaier T, Markert S, Dagan T, Hacker C, Lucocq JM, Schweder T, Rattei T, Hall N, Hirt RP, Embley TM, No?l CJ, Becher D, Bernhardt J. The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution. PLoS Pathog. 2012; 8(10):e1002979. PMID: 23133373; PMCID: PMC3486916.
      Citations: 77     Fields:    Translation:HumansAnimalsCells
    61. Charnaud S, Dagan T, Riedel J, Mandal P, Pesce ER, Blatch GL, Crabb BS, Gilson PR, Przyborski JM, K?lzer S. Plasmodium falciparum-encoded exported hsp70/hsp40 chaperone/co-chaperone complexes within the host erythrocyte. Cell Microbiol. 2012 Nov; 14(11):1784-95. PMID: 22925632.
      Citations: 74     Fields:    Translation:HumansAnimalsCells
    62. Ilhan J, Roettger M, Dagan T, Martin WF, Stucken K. Transformation and conjugal transfer of foreign genes into the filamentous multicellular cyanobacteria (subsection V) Fischerella and Chlorogloeopsis. Curr Microbiol. 2012 Nov; 65(5):552-60. PMID: 22833222.
      Citations: 21     Fields:    Translation:Cells
    63. Landan G, Ilhan J, Dagan T, Bogumil D. Chaperones divide yeast proteins into classes of expression level and evolutionary rate. Genome Biol Evol. 2012; 4(5):618-25. PMID: 22417914; PMCID: PMC3381671.
      Citations: 13     Fields:    Translation:AnimalsCells
    64. Landan G, Schenk M, Dagan T, Martin WF, Thiergart T. An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol Evol. 2012; 4(4):466-85. PMID: 22355196; PMCID: PMC3342870.
      Citations: 57     Fields:    Translation:AnimalsCells
    65. Burstein D, Gould SB, Zimorski V, Kloesges T, Kiosse F, Major P, Martin WF, Pupko T, Dagan T. A machine learning approach to identify hydrogenosomal proteins in Trichomonas vaginalis. Eukaryot Cell. 2012 Feb; 11(2):217-28. PMID: 22140228; PMCID: PMC3272890.
      Citations: 10     Fields:    Translation:AnimalsCells
    66. Dagan T, Martin WF, Gould SB, Woehle C. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biol Evol. 2011; 3:1220-30. PMID: 21965651; PMCID: PMC3205606.
      Citations: 39     Fields:    Translation:AnimalsCells
    67. Dagan T, Popa O. Trends and barriers to lateral gene transfer in prokaryotes. Curr Opin Microbiol. 2011 Oct; 14(5):615-23. PMID: 21856213.
      Citations: 98     Fields:    Translation:Cells
    68. Dagan T. Phylogenomic networks. Trends Microbiol. 2011 Oct; 19(10):483-91. PMID: 21820313.
      Citations: 36     Fields:    Translation:Cells
    69. Hazkani-Covo E, Landan G, Martin W, Dagan T, Popa O. Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes. Genome Res. 2011 Apr; 21(4):599-609. PMID: 21270172; PMCID: PMC3065707.
      Citations: 108     Fields:    Translation:Cells
    70. List JM, Geisler H, Fangerau H, Gray RD, Martin W, Dagan T, Nelson-Sathi S. Networks uncover hidden lexical borrowing in Indo-European language evolution. Proc Biol Sci. 2011 Jun 22; 278(1713):1794-803. PMID: 21106583; PMCID: PMC3097823.
      Citations: 18     Fields:    Translation:Humans
    71. Popa O, Martin W, Dagan T, Kloesges T. Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths. Mol Biol Evol. 2011 Feb; 28(2):1057-74. PMID: 21059789; PMCID: PMC3021791.
      Citations: 83     Fields:    Translation:Cells
    72. Deusch O, Martin R, Schmitt V, Christa G, Pinzger B, Gould SB, Dagan T, Klussmann-Kolb A, Martin W, W?gele H, H?ndeler K. Transcriptomic evidence that longevity of acquired plastids in the photosynthetic slugs Elysia timida and Plakobranchus ocellatus does not entail lateral transfer of algal nuclear genes. Mol Biol Evol. 2011 Jan; 28(1):699-706. PMID: 20829345; PMCID: PMC3002249.
      Citations: 42     Fields:    Translation:AnimalsCells
    73. Dagan T, Bogumil D. Chaperonin-dependent accelerated substitution rates in prokaryotes. Genome Biol Evol. 2010; 2:602-8. PMID: 20660111; PMCID: PMC3296371.
      Citations: 31     Fields:    Translation:Cells
    74. Roettger M, Bryant D, Martin W, Dagan T. Genome networks root the tree of life between prokaryotic domains. Genome Biol Evol. 2010 Jul 12; 2:379-92. PMID: 20624742; PMCID: PMC2997548.
      Citations: 42     Fields:    Translation:Cells
    75. Dagan T, Gruenheit N, Martin W, Ahmadinejad N, Gabald?n T. Evolution of spliceosomal introns following endosymbiotic gene transfer. BMC Evol Biol. 2010 Feb 23; 10:57. PMID: 20178587; PMCID: PMC2834692.
      Citations: 13     Fields:    Translation:AnimalsCells
    76. Bapteste E, O'Malley MA, Beiko RG, Ereshefsky M, Gogarten JP, Franklin-Hall L, Dagan T, Boucher Y, Martin W, Lapointe FJ, Dupr? J. Prokaryotic evolution and the tree of life are two different things. Biol Direct. 2009 Sep 29; 4:34. PMID: 19788731; PMCID: PMC2761302.
      Citations: 78     Fields:    Translation:Cells
    77. Martin W, Dagan T. Getting a better picture of microbial evolution en route to a network of genomes. Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12; 364(1527):2187-96. PMID: 19571239; PMCID: PMC2873007.
      Citations: 31     Fields:    Translation:Cells
    78. Martin W, Dagan T. Microbiology. Seeing green and red in diatom genomes. Science. 2009 Jun 26; 324(5935):1651-2. PMID: 19556490.
      Citations: 8     Fields:    Translation:AnimalsCells
    79. Martin W, Dagan T, Roettger M. A machine-learning approach reveals that alignment properties alone can accurately predict inference of lateral gene transfer from discordant phylogenies. Mol Biol Evol. 2009 Sep; 26(9):1931-9. PMID: 19443855.
      Citations: 7     Fields:    
    80. Adrait A, Tardif M, van Lis R, Deusch O, Dagan T, Kuhn L, Gontero B, Martin W, Joyard J, Rolland N, Atteia A, Brugi?re S, Garin J. A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor. Mol Biol Evol. 2009 Jul; 26(7):1533-48. PMID: 19349646.
      Citations: 84     Fields:    Translation:AnimalsCells
    81. Artzy-Randrup Y, Martin W, Dagan T. Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci U S A. 2008 Jul 22; 105(29):10039-44. PMID: 18632554; PMCID: PMC2474566.
      Citations: 177     Fields:    Translation:Cells
    82. Landan G, Roettger M, Gruenheit N, Kowallik KV, Allen JF, Martin W, Dagan T, Deusch O. Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. Mol Biol Evol. 2008 Apr; 25(4):748-61. PMID: 18222943.
      Citations: 77     Fields:    Translation:AnimalsCells
    83. Basu MK, Rogozin IB, Deusch O, Dagan T, Martin W, Koonin EV. Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues. Mol Biol Evol. 2008 Jan; 25(1):111-9. PMID: 17974547.
      Citations: 19     Fields:    Translation:AnimalsCells
    84. Ozkan H, Walther A, Kohl J, Dagan T, Salamini F, Martin W, Kilian B. Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (Einkorn) domestication: implications for the origin of agriculture. Mol Biol Evol. 2007 Dec; 24(12):2657-68. PMID: 17898361.
      Citations: 40     Fields:    Translation:Animals
    85. Dagan T, Martin W, Ahmadinejad N. Genome history in the symbiotic hybrid Euglena gracilis. Gene. 2007 Nov 01; 402(1-2):35-9. PMID: 17716833.
      Citations: 15     Fields:    Translation:HumansAnimals
    86. Dagan T, Martin W. Testing hypotheses without considering predictions. Bioessays. 2007 May; 29(5):500-3. PMID: 17450603.
      Citations: 7     Fields:    Translation:AnimalsCells
    87. Martin W, Dagan T, Koonin EV, Dipippo JL, Gogarten JP, Lake JA. The evolution of eukaryotes. Science. 2007 Apr 27; 316(5824):542-3; author reply 542-3. PMID: 17463271.
      Citations: 18     Fields:    Translation:HumansCells
    88. Martin W, Dagan T, Esser C. The origin of mitochondria in light of a fluid prokaryotic chromosome model. Biol Lett. 2007 Apr 22; 3(2):180-4. PMID: 17251118; PMCID: PMC2375920.
      Citations: 51     Fields:    Translation:Cells
    89. Martin W, Dagan T. Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proc Natl Acad Sci U S A. 2007 Jan 16; 104(3):870-5. PMID: 17213324; PMCID: PMC1783406.
      Citations: 95     Fields:    Translation:Cells
    90. Martin W, Dagan T. The tree of one percent. Genome Biol. 2006; 7(10):118. PMID: 17081279; PMCID: PMC1794558.
      Citations: 121     Fields:    Translation:AnimalsCells
    91. Blekhman R, Graur D, Dagan T. The "domino theory" of gene death: gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens. Mol Biol Evol. 2006 Feb; 23(2):310-6. PMID: 16237210.
      Citations: 39     Fields:    Translation:Cells
    92. Cohen N, Dagan T, Stone L, Graur D. GC composition of the human genome: in search of isochores. Mol Biol Evol. 2005 May; 22(5):1260-72. PMID: 15728737.
      Citations: 36     Fields:    Translation:HumansCells
    93. Dagan T, Graur D. The comparative method rules! Codon volatility cannot detect positive Darwinian selection using a single genome sequence. Mol Biol Evol. 2005 Mar; 22(3):496-500. PMID: 15525696.
      Citations: 5     Fields:    Translation:HumansAnimals
    94. Dagan T, Bedrin L, Horowitz Z, Chaushu G, Wolf M, Kronenberg J, Talmi YP. Quality of life of well-differentiated thyroid carcinoma patients. J Laryngol Otol. 2004 Jul; 118(7):537-42. PMID: 15318961.
      Citations: 16     Fields:    Translation:Humans
    95. Sorek R, Lev-Maor G, Reznik M, Dagan T, Belinky F, Graur D, Ast G. Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons. Mol Cell. 2004 Apr 23; 14(2):221-31. PMID: 15099521.
      Citations: 85     Fields:    Translation:HumansCells
    96. Dagan T, Sorek R, Sharon E, Ast G, Graur D. AluGene: a database of Alu elements incorporated within protein-coding genes. Nucleic Acids Res. 2004 Jan 01; 32(Database issue):D489-92. PMID: 14681464; PMCID: PMC308866.
      Citations: 34     Fields:    Translation:HumansCells
    97. Kronenberg J, Baumgartner W, Migirov L, Dagan T, Hildesheimer M. The suprameatal approach: an alternative surgical approach to cochlear implantation. Otol Neurotol. 2004 Jan; 25(1):41-4; discussion 44-5. PMID: 14724490.
      Citations: 20     Fields:    Translation:Humans
    98. Fleishman SJ, Dagan T, Graur D. pANT: a method for the pairwise assessment of nonfunctionalization times of processed pseudogenes. Mol Biol Evol. 2003 Nov; 20(11):1876-80. PMID: 12885960.
      Citations: 2     Fields:    Translation:Animals
    99. Dagan T, Talmor Y, Graur D. Ratios of radical to conservative amino acid replacement are affected by mutational and compositional factors and may not be indicative of positive Darwinian selection. Mol Biol Evol. 2002 Jul; 19(7):1022-5. PMID: 12082122.
      Citations: 36     Fields:    Translation:HumansAnimalsCells
    100. Kronenberg J, Migirov L, Dagan T. Suprameatal approach: new surgical approach for cochlear implantation. J Laryngol Otol. 2001 Apr; 115(4):283-5. PMID: 11276329.
      Citations: 30     Fields:    Translation:Humans

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