Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

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Christoph Kaleta

Prof.
Christian-Albrechts-University Kiel
Medical Systems Biology, Institute for Experimental Medicine
Michaelisstraße 5, 24105 Kiel, Germany
Kiel 24105
+49 431 5003034
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Beder T, Hansen BT, Hartmann AM, Zimmermann J, Amelunxen E, Wolgast N, Walter W, Zaliova M, Antic ?, Chouvarine P, Bartsch L, Barz MJ, Bultmann M, Horns J, Bendig S, K?ssens J, Kaleta C, Cario G, Schrappe M, Neumann M, G?kbuget N, Bergmann AK, Trka J, Haferlach C, Br?ggemann M, Baldus CD, Bastian L. The Gene Expression Classifier ALLCatchR Identifies B-cell Precursor ALL Subtypes and Underlying Developmental Trajectories Across Age. Hemasphere. 2023 Sep; 7(9):e939. PMID: 37645423; PMCID: PMC10461941.
      Citations: 3     
    2. Marinos G, Hamerich IK, Debray R, Obeng N, Petersen C, Taubenheim J, Zimmermann J, Blackburn D, Samuel BS, Dierking K, Franke A, Laudes M, Waschina S, Schulenburg H, Kaleta C. Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics. bioRxiv. 2023 Feb 18. PMID: 36824941; PMCID: PMC9949166.
      Citations:    
    3. Zacharias HU, Kaleta C, Cossais F, Schaeffer E, Berndt H, Best L, Dost T, Gl?sing S, Groussin M, Poyet M, Heinzel S, Bang C, Siebert L, Demetrowitsch T, Leypoldt F, Adelung R, Bartsch T, Bosy-Westphal A, Schwarz K, Berg D. Microbiome and Metabolome Insights into the Role of the Gastrointestinal-Brain Axis in Parkinson's and Alzheimer's Disease: Unveiling Potential Therapeutic Targets. Metabolites. 2022 Dec 05; 12(12). PMID: 36557259.
      Citations: 4     
    4. Schmidt S, Haase M, Best L, Groth M, Lindner J, Witte OW, Kaleta C, Frahm C. Restoring Age-Related Cognitive Decline through Environmental Enrichment: A Transcriptomic Approach. Cells. 2022 Nov 30; 11(23). PMID: 36497123.
      Citations: 1     Fields:    
    5. Ederer ML, Best L, Lindner J, Kaleta C, Witte OW, Simon R, Frahm C, G?nther M. Voluntary Wheel Running in Old C57BL/6 Mice Reduces Age-Related Inflammation in the Colon but Not in the Brain. Cells. 2022 02 06; 11(3). PMID: 35159375; PMCID: PMC8834481.
      Citations: 2     Fields:    Translation:Animals
    6. Henneke L, Schlicht K, Andreani NA, Hollstein T, Demetrowitsch T, Knappe C, Hartmann K, Jensen-Kroll J, Rohmann N, Pohlschneider D, Geisler C, Schulte DM, Settgast U, Zimmermann J, Kaleta C, Baines JF, Shearer J, Shah S, Shen-Tu G, Schwarz K, Franke A, Schreiber S, Laudes M, T?rk K. A dietary carbohydrate - gut Parasutterella - human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes. Gut Microbes. 2022 Jan-Dec; 14(1):2057778. PMID: 35435797; PMCID: PMC9037427.
      Citations: 25     Fields:    Translation:Humans
    7. Forero-Rodr?guez LJ, Josephs-Spaulding J, Flor S, Pinz?n A, Kaleta C. Parkinson's Disease and the Metal-Microbiome-Gut-Brain Axis: A Systems Toxicology Approach. Antioxidants (Basel). 2021 Dec 28; 11(1). PMID: 35052575; PMCID: PMC8773335.
      Citations: 2     
    8. Ewald J, Schuster S, Kaleta C, Rivieccio F, Radosa L, Brakhage AA. Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis. PLoS Comput Biol. 2021 12; 17(12):e1009645. PMID: 34898608; PMCID: PMC8699926.
      Citations: 4     Fields:    Translation:HumansAnimalsCells
    9. Weiss AS, Burrichter AG, Durai Raj AC, von Strempel A, Meng C, Kleigrewe K, Huber C, Eisenreich W, Jochum LM, Lincetto C, Marinos G, Zimmermann J, Kaleta C, Sanchez A, M?nch PC, R?ssler L, G?ing S, Jung K, H?bner J, Stecher B. In vitro interaction network of a synthetic gut bacterial community. ISME J. 2022 04; 16(4):1095-1109. PMID: 34857933; PMCID: PMC8941000.
      Citations: 31     Fields:    Translation:AnimalsCells
    10. Hinrichsen F, Hamm J, Westermann M, Mishra N, Sommer N, Klischies K, Prasse D, Zimmermann J, Kaiser S, Bordoni D, Fazio A, Marinos G, Laue G, Imm S, Tremaroli V, Basic M, Schmitz RA, Krautwald S, Wolf A, Kaleta C, Rosenstiel P, Sommer F, Schr?der L, Shima K, Walker A, H?sler R, Stecher B, Schmitt-Kopplin P, Rupp J, B?ckhed F. Microbial regulation of hexokinase 2 links mitochondrial metabolism and cell death in colitis. Cell Metab. 2021 12 07; 33(12):2355-2366.e8. PMID: 34847376.
      Citations: 20     Fields:    Translation:HumansAnimalsCells
    11. Waschina S, Kaleta C, Giri S, O?a L, Shitut S, Yousif G, Kost C. Metabolic dissimilarity determines the establishment of cross-feeding interactions in bacteria. Curr Biol. 2021 12 20; 31(24):5547-5557.e6. PMID: 34731676.
      Citations: 17     Fields:    Translation:HumansCells
    12. Lyng M, Josephs-Spaulding J, Krogh TJ, Rettig HC, Chkonia M, Waschina S, Graspeuntner S, Rupp J, M?ller-Jensen J, Kaleta C. Recurrent Urinary Tract Infections: Unraveling the Complicated Environment of Uncomplicated rUTIs. Front Cell Infect Microbiol. 2021; 11:562525. PMID: 34368008; PMCID: PMC8340884.
      Citations: 10     Fields:    Translation:Humans
    13. Schuster S, Ewald J, Kaleta C. Modeling the energy metabolism in immune cells. Curr Opin Biotechnol. 2021 04; 68:282-291. PMID: 33770632.
      Citations: 9     Fields:    Translation:HumansCells
    14. Zimmermann J, Kaleta C, Waschina S. gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models. Genome Biol. 2021 03 10; 22(1):81. PMID: 33691770; PMCID: PMC7949252.
      Citations: 67     Fields:    Translation:HumansCellsPHPublic Health
    15. Petruschke H, Canzler S, Riesbeck S, Zimmerman J, Marinos G, Kaleta C, Jehmlich N, von Bergen M, Schori C, Poehlein A, Daniel R, Frei D, Segessemann T, Ahrens CH. Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome. Microbiome. 2021 02 23; 9(1):55. PMID: 33622394; PMCID: PMC7903761.
      Citations: 12     Fields:    Translation:HumansCells
    16. Bernardes JP, Mishra N, Tran F, Bahmer T, Best L, Blase JI, Bordoni D, Geisen U, Josephs-Spaulding J, Rosati E, Aschenbrenner AC, Bacher P, Baran N, Boysen T, Bruse N, Elke G, Ellinghaus D, Fischer J, Forster M, Franke A, Frey N, Friedrichs A, Hamm J, Hinrichsen F, Hoeppner MP, Imm S, Kaiser S, Kan YH, Knoll R, Lange C, Laue G, Lindner M, Marinos G, Nattermann J, Noth R, Pickkers P, Rabe KF, Schaffarzyk A, Scheffold A, Schulte-Schrepping J, Schunk D, Skowasch D, Ulas T, Wittig M, Zimmermann J, Hoyer BF, Kaleta C, Heyckendorf J, Kox M, Rybniker J, Schreiber S, Schultze JL, Rosenstiel P, HCA Lung Biological Network, Deutsche COVID-19 Omics Initiative (DeCOI), Franzenburg J, K?hler P, K?nstner A, Brandt B, D?rr J, Dr?ger A, Franzenburg S, Fu? J, Gl?ck A, Junker R, Lier C, Markewitz R, Renz A, R?cken C, Rupp J, Wandinger KP, Busch H. Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19. Immunity. 2020 12 15; 53(6):1296-1314.e9. PMID: 33296687; PMCID: PMC7689306.
      Citations: 183     Fields:    Translation:HumansCells
    17. Demetrowitsch TJ, Schlicht K, Knappe C, Zimmermann J, Jensen-Kroll J, Pisarevskaja A, Brix F, Brandes J, Geisler C, Marinos G, Sommer F, Schulte DM, Kaleta C, Andersen V, Laudes M, Schwarz K, Waschina S. Precision Nutrition in Chronic Inflammation. Front Immunol. 2020; 11:587895. PMID: 33329569; PMCID: PMC7719806.
      Citations: 6     Fields:    Translation:HumansAnimals
    18. Dirksen P, Zimmermann J, Zhang F, Tietje AM, Shapira M, Kaleta C, Schulenburg H, Samuel BS, Assi? A, Marsh SA, F?lix MA. CeMbio - The Caenorhabditis elegans Microbiome Resource. G3 (Bethesda). 2020 09 02; 10(9):3025-3039. PMID: 32669368; PMCID: PMC7466993.
      Citations: 50     Fields:    Translation:Animals
    19. Franke A, Kaleta C, Krogh TJ, M?ller-Jensen J. Elucidating the Influence of Chromosomal Architecture on Transcriptional Regulation in Prokaryotes - Observing Strong Local Effects of Nucleoid Structure on Gene Regulation. Front Microbiol. 2020; 11:2002. PMID: 32983020; PMCID: PMC7491251.
      Citations: 3     
    20. Bhat J, Bergmann AK, Waschina S, Kaleta C, Siebert R, Ammerpohl O, Kabelitz D, Nerl C. DNA methylation profile of a hepatosplenic gamma/delta T-cell lymphoma patient associated with response to interferon-a therapy. Cell Mol Immunol. 2021 05; 18(5):1332-1335. PMID: 32820235; PMCID: PMC8093208.
      Citations: 1     Fields:    Translation:HumansCells
    21. Marinos G, Kaleta C, Waschina S. Defining the nutritional input for genome-scale metabolic models: A roadmap. PLoS One. 2020; 15(8):e0236890. PMID: 32797084; PMCID: PMC7428157.
      Citations: 16     Fields:    Translation:Cells
    22. van Dam E, van Leeuwen LAG, Dos Santos E, James J, Best L, Lennicke C, Vincent AJ, Marinos G, Foley A, Buricova M, Mokochinski JB, Kramer HB, Lieb W, Laudes M, Franke A, Kaleta C, Cochem? HM. Sugar-Induced Obesity and Insulin Resistance Are Uncoupled from Shortened Survival in Drosophila. Cell Metab. 2020 04 07; 31(4):710-725.e7. PMID: 32197072; PMCID: PMC7156915.
      Citations: 33     Fields:    Translation:HumansAnimals
    23. Zimmermann J, Obeng N, Yang W, Pees B, Petersen C, Waschina S, Kissoyan KA, Aidley J, Hoeppner MP, Bunk B, Leippe M, Dierking K, Kaleta C, Schulenburg H, Spr?er C. The functional repertoire contained within the native microbiota of the model nematode Caenorhabditis elegans. ISME J. 2020 01; 14(1):26-38. PMID: 31484996; PMCID: PMC6908608.
      Citations: 39     Fields:    Translation:AnimalsCells
    24. Pryor R, Norvaisas P, Marinos G, Best L, Thingholm LB, Quintaneiro LM, De Haes W, Esser D, Waschina S, Lujan C, Smith RL, Scott TA, Martinez-Martinez D, Woodward O, Bryson K, Laudes M, Lieb W, Houtkooper RH, Franke A, Temmerman L, Bjedov I, Kaleta C, Cabreiro F, Cochem? HM. Host-Microbe-Drug-Nutrient Screen Identifies Bacterial Effectors of Metformin Therapy. Cell. 2019 09 05; 178(6):1299-1312.e29. PMID: 31474368; PMCID: PMC6736778.
      Citations: 111     Fields:    Translation:HumansAnimalsCells
    25. Yang W, Petersen C, Pees B, Zimmermann J, Waschina S, Dirksen P, Rosenstiel P, Tholey A, Leippe M, Dierking K, Kaleta C, Schulenburg H. The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life. Front Microbiol. 2019; 10:1793. PMID: 31440221; PMCID: PMC6693516.
      Citations: 18     
    26. Aden K, Rehman A, Waschina S, Pan WH, Nunez AM, Bharti R, Zimmerman J, Bethge J, Schulte B, Schulte D, Franke A, Nikolaus S, Schroeder JO, Vandeputte D, Raes J, Szymczak S, Waetzig GH, Zeuner R, Kaleta C, Schreiber S, Rosenstiel P, Walker A, Lucio M, Schmitt-Kopplin P. Metabolic Functions of Gut Microbes Associate With Efficacy of?Tumor Necrosis Factor Antagonists in Patients With Inflammatory Bowel Diseases. Gastroenterology. 2019 11; 157(5):1279-1292.e11. PMID: 31326413.
      Citations: 97     Fields:    Translation:HumansCells
    27. Graspeuntner S, Waschina S, K?nzel S, Twisselmann N, Rausch TK, Cloppenborg-Schmidt K, Zimmermann J, Viemann D, Herting E, G?pel W, Baines JF, Kaleta C, Rupp J, H?rtel C, Pagel J. Gut Dysbiosis With Bacilli Dominance and Accumulation of Fermentation Products Precedes Late-onset Sepsis in Preterm Infants. Clin Infect Dis. 2019 07 02; 69(2):268-277. PMID: 30329017.
      Citations: 36     Fields:    Translation:HumansCells
    28. Waschina S, Kaleta C, Giri S, Kost C. Defining Division of Labor in Microbial Communities. J Mol Biol. 2019 11 22; 431(23):4712-4731. PMID: 31260694.
      Citations: 23     Fields:    
    29. Irizar PA, Esser D, Groth M, Frahm C, Priebe S, Baumgart M, Hartmann N, Marthandan S, Menzel U, Schmidt S, Ast V, Caliebe A, Krawczak M, Ristow M, Schuster S, Cellerino A, Diekmann S, Englert C, Hemmerich P, Guthke R, Witte OW, Platzer M, Ruppin E, Kaleta C, Sch?uble S, M?ller J, K?nig R, S?hnel J. Publisher Correction: Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly. Nat Commun. 2019 May 31; 10(1):2459. PMID: 31150008; PMCID: PMC6544640.
      Citations: 2     Fields:    
    30. Fabian A, Stegner S, Miarka L, Zimmermann J, Lenk L, Rahn S, Buttlar J, Viol F, Knaack H, Esser D, Marinos G, Mikulits W, Saur D, Kaleta C, Sebens S, Sch?uble S, Gro?mann P, H?sler R, Sch?fer H. Metastasis of pancreatic cancer: An uninflamed liver micromilieu controls cell growth and cancer stem cell properties by oxidative phosphorylation in pancreatic ductal epithelial cells. Cancer Lett. 2019 07 01; 453:95-106. PMID: 30930235.
      Citations: 20     Fields:    Translation:HumansAnimalsCells
    31. Kissoyan KAB, Drechsler M, Stange EL, Zimmermann J, Kaleta C, Bode HB, Dierking K. Natural C.?elegans Microbiota Protects against Infection via Production of a Cyclic Lipopeptide of the Viscosin Group. Curr Biol. 2019 03 18; 29(6):1030-1037.e5. PMID: 30827913.
      Citations: 36     Fields:    Translation:AnimalsCells
    32. Hastings J, Rodriguez N, Joshi CJ, Hattwell JPN, Ebert PR, van Weeghel M, Gao AW, Wakelam MJO, Houtkooper RH, Mains A, Sadykoff S, Schroeder F, Lewis NE, Schirra HJ, Kaleta C, Casanueva O, Witting M, Le Nov?re N. Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism Caenorhabditis elegans. Front Mol Biosci. 2018; 5:96. PMID: 30488036; PMCID: PMC6246695.
      Citations: 18     
    33. Aden K, Bartsch K, Dahl J, Reijns MAM, Esser D, Sheibani-Tezerji R, Sinha A, Wottawa F, Ito G, Mishra N, Knittler K, Burkholder A, Welz L, van Es J, Tran F, Lipinski S, Kakavand N, Boeger C, Lucius R, von Schoenfels W, Schafmayer C, Lenk L, Chalaris A, Clevers H, Kaleta C, Rose-John S, Schreiber S, Kunkel T, Rosenstiel P, R?cken C, Rabe B. Epithelial RNase H2 Maintains Genome Integrity and Prevents Intestinal Tumorigenesis in Mice. Gastroenterology. 2019 01; 156(1):145-159.e19. PMID: 30273559; PMCID: PMC6311085.
      Citations: 29     Fields:    Translation:HumansAnimalsCells
    34. Kaleta C, Krogh TJ, M?ller-Jensen J. Impact of Chromosomal Architecture on the Function and Evolution of Bacterial Genomes. Front Microbiol. 2018; 9:2019. PMID: 30210483; PMCID: PMC6119826.
      Citations: 20     
    35. Aramillo Irizar P, Esser D, Groth M, Frahm C, Priebe S, Baumgart M, Hartmann N, Marthandan S, Menzel U, Schmidt S, Ast V, Caliebe A, Krawczak M, Ristow M, Schuster S, Cellerino A, Diekmann S, Englert C, Hemmerich P, Guthke R, Witte OW, Platzer M, Ruppin E, Kaleta C, Sch?uble S, M?ller J, K?nig R, S?hnel J. Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly. Nat Commun. 2018 01 30; 9(1):327. PMID: 29382830; PMCID: PMC5790807.
      Citations: 50     Fields:    Translation:HumansAnimalsCells
    36. Klimmasch L, Germerodt S, Kaleta C, L?ck A, Gro?mann P. Computational Investigation of Environment-Noise Interaction in Single-Cell Organisms: The Merit of Expression Stochasticity Depends on the Quality of Environmental Fluctuations. Sci Rep. 2018 01 10; 8(1):333. PMID: 29321537; PMCID: PMC5762857.
      Citations:    Fields:    Translation:PHPublic Health
    37. Gro?mann P, L?ck A, Kaleta C. Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli. Sci Rep. 2017 12 08; 7(1):17213. PMID: 29222445; PMCID: PMC5722913.
      Citations: 6     Fields:    Translation:Cells
    38. Ewald J, Bartl M, Kaleta C. Deciphering the regulation of metabolism with dynamic optimization: an overview of recent advances. Biochem Soc Trans. 2017 08; 45(4):1035-1043. PMID: 28754658.
      Citations: 6     Fields:    
    39. Kaleta C, Dempfle A, Weidinger S, Krauss-Etschmann S, Schulte D, Tholey A, Rupp J, Laudes M, Baines JF, Sommer F, R?hlemann MC, Bang C, H?ppner M, Rehman A, Schmitt-Kopplin P, Ellinghaus E, Schmidt-Arras D, Aden K, Ellinghaus D, Schreiber S, Rosenstiel P, Franke A. Microbiomarkers in inflammatory bowel diseases: caveats come with caviar. Gut. 2017 10; 66(10):1734-1738. PMID: 28733278; PMCID: PMC5595102.
      Citations: 24     Fields:    Translation:Humans
    40. Ewald J, Germerodt S, Kaleta C, Schuster S, D?hring S, Dandekar T. Modelling the host-pathogen interactions of macrophages and Candida albicans using Game Theory and dynamic optimization. J R Soc Interface. 2017 07; 14(132). PMID: 28701506; PMCID: PMC5550964.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    41. Zimmermann J, Kaleta C, Bauer E, Baldini F, Thiele I. BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities. PLoS Comput Biol. 2017 05; 13(5):e1005544. PMID: 28531184; PMCID: PMC5460873.
      Citations: 89     Fields:    Translation:HumansCells
    42. Ewald J, Bartl M, Dandekar T, Kaleta C. Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PLoS Comput Biol. 2017 02; 13(2):e1005371. PMID: 28212377; PMCID: PMC5315294.
      Citations: 8     Fields:    Translation:Cells
    43. Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M, H?lzer M, Kr?hling V, Fallmann J, Linde J. Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells. Sci Rep. 2017 01 11; 7:39421. PMID: 28074834; PMCID: PMC5225603.
      Citations:    Fields:    
    44. Barth E, Collatz M, Ewald J, Feldhahn LM, Fricke M, Gebauer J, Hufsky F, Mostajo N, Riege K, Sahyoun AH, Vogel B, Wehner S, Grosse I, Kaleta C, Becker S, Marz M, H?lzer M, Kr?hling V, Amman F, Bernhart SH, Carmelo VA, Doose G, Eggenhofer F, Fallmann J, Gruber AJ, Indrischek H, Kanton S, Linde J, Ochsenreiter R, Rivarola-Duarte L, Saunders SJ, Seemann SE, Tanzer A, Wolfinger MT, Backofen R, Gorodkin J, Hofacker I, Hoffmann S, Stadler PF. Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells. Sci Rep. 2016 10 07; 6:34589. PMID: 27713552; PMCID: PMC5054393.
      Citations: 30     Fields:    Translation:HumansAnimalsCells
    45. Sheibani-Tezerji R, Sinha A, Barann M, Rehman A, Esser D, Aden K, Knecht C, Brandt B, Nikolaus S, Kaleta C, Franke A, Fretter C, Krawczak M, Schreiber S, Rosenstiel P, H?sler R, Sch?uble S, M?ller W, H?tt MT. Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease. Gut. 2017 12; 66(12):2087-2097. PMID: 27694142; PMCID: PMC5749366.
      Citations: 45     Fields:    Translation:HumansCells
    46. Germerodt S, Bohl K, Pande S, Kaleta C, Schuster S, Kost C, L?ck A, Schr?ter A. Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities. PLoS Comput Biol. 2016 06; 12(6):e1004986. PMID: 27314840; PMCID: PMC4912067.
      Citations: 40     Fields:    Translation:Cells
    47. Gebauer J, Gentsch C, Waschina S, Klimmasch L, Schuster S, Kaleta C, Mansfeld J, Schmei?er K, Brandes S, Zamboni N, Zarse K, Ristow M, Sch?uble S. A Genome-Scale Database and Reconstruction of Caenorhabditis elegans Metabolism. Cell Syst. 2016 05 25; 2(5):312-22. PMID: 27211858.
      Citations: 19     Fields:    Translation:HumansAnimals
    48. Waschina S, D'Souza G, Kost C, Kaleta C. Metabolic network architecture and carbon source determine metabolite production costs. FEBS J. 2016 06; 283(11):2149-63. PMID: 27029764.
      Citations: 20     Fields:    Translation:Cells
    49. Schuster S, Boley D, M?ller P, Stark H, Kaleta C. Mathematical models for explaining the Warburg effect: a review focussed on ATP and biomass production. Biochem Soc Trans. 2015 Dec; 43(6):1187-94. PMID: 26614659.
      Citations: 23     Fields:    Translation:HumansAnimalsCells
    50. Mansfeld J, Urban N, Priebe S, Groth M, Frahm C, Hartmann N, Gebauer J, Ravichandran M, Dommaschk A, Schmeisser S, Kuhlow D, Monajembashi S, Bremer-Streck S, Hemmerich P, Kiehntopf M, Englert C, Guthke R, Kaleta C, Platzer M, Witte OW, Zarse K, Ristow M, Zamboni N, S?hnel J. Branched-chain amino acid catabolism is a conserved regulator of physiological ageing. Nat Commun. 2015 Dec 01; 6:10043. PMID: 26620638; PMCID: PMC4686672.
      Citations: 70     Fields:    Translation:Animals
    51. Bartl M, Pfaff M, Ghallab A, Driesch D, Henkel SG, Hengstler JG, Schuster S, Kaleta C, Gebhardt R, Zellmer S, Li P. Optimality in the zonation of ammonia detoxification in rodent liver. Arch Toxicol. 2015 Nov; 89(11):2069-78. PMID: 26438405.
      Citations: 18     Fields:    Translation:AnimalsCells
    52. Balsa-Canto E, Ewald J, Bartl M, Li P, Banga JR, Kaleta C, de Hijas-Liste GM. Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation. BMC Bioinformatics. 2015 May 16; 16:163. PMID: 25982966; PMCID: PMC4433072.
      Citations: 5     Fields:    Translation:Cells
    53. Ewald J, K?tzing M, Bartl M, Kaleta C. Footprints of optimal protein assembly strategies in the operonic structure of prokaryotes. Metabolites. 2015 Apr 28; 5(2):252-69. PMID: 25927816; PMCID: PMC4495372.
      Citations: 2     
    54. D'Souza G, Waschina S, Kaleta C, Kost C. Plasticity and epistasis strongly affect bacterial fitness after losing multiple metabolic genes. Evolution. 2015 05; 69(5):1244-54. PMID: 25765095.
      Citations: 11     Fields:    Translation:Cells
    55. Schmidt R, Waschina S, Boettger-Schmidt D, Kost C, Kaleta C. Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions. Bioinformatics. 2015 Feb 01; 31(3):373-81. PMID: 25286919.
      Citations: 2     Fields:    Translation:Cells
    56. D'Souza G, Waschina S, Pande S, Bohl K, Kaleta C, Kost C. Less is more: selective advantages can explain the prevalent loss of biosynthetic genes in bacteria. Evolution. 2014 09; 68(9):2559-70. PMID: 24910088.
      Citations: 101     Fields:    Translation:Cells
    57. Fuellen G, Boerries M, Busch H, de Grey A, Hahn U, Hiller T, Hoeflich A, Jansen L, Janssens GE, Kaleta C, Meinema AC, Simm A, Schofield PN, Smith B, Vera J, Wagner W, Wuttke D, Sch?uble S, S?hnel J, W?nne EC. In silico approaches and the role of ontologies in aging research. Rejuvenation Res. 2013 Dec; 16(6):540-6. PMID: 24188080; PMCID: PMC4124533.
      Citations:    Fields:    Translation:Humans
    58. Pande S, Merker H, Bohl K, Reichelt M, Schuster S, Kaleta C, Kost C, de Figueiredo LF. Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria. ISME J. 2014 May; 8(5):953-62. PMID: 24285359; PMCID: PMC3996690.
      Citations: 116     Fields:    Translation:Cells
    59. Kaleta C, Rinas U, Schuster S, Sch?uble S. Metabolic costs of amino acid and protein production in Escherichia coli. Biotechnol J. 2013 Sep; 8(9):1105-14. PMID: 23744758.
      Citations: 60     Fields:    Translation:Cells
    60. Bartl M, Schuster S, Li P, Kaleta C, K?tzing M. Dynamic optimization identifies optimal programmes for pathway regulation in prokaryotes. Nat Commun. 2013; 4:2243. PMID: 23979724.
      Citations: 12     Fields:    Translation:Cells
    61. Gebauer J, Schuster S, Kaleta C, de Figueiredo LF. Detecting and investigating substrate cycles in a genome-scale human metabolic network. FEBS J. 2012 Sep; 279(17):3192-202. PMID: 22776428.
      Citations: 9     Fields:    Translation:HumansCells
    62. Kaleta C, Schuster S, de Figueiredo LF. Against the stream: relevance of gluconeogenesis from fatty acids for natives of the arctic regions. Int J Circumpolar Health. 2012 May 03; 71(0):1-2. PMID: 22584514; PMCID: PMC3417715.
      Citations: 1     Fields:    Translation:HumansCells
    63. Schuster S, Kaleta C, Behre J, de Figueiredo LF. Detecting structural invariants in biological reaction networks. Methods Mol Biol. 2012; 804:377-407. PMID: 22144164.
      Citations: 1     Fields:    Translation:Cells
    64. Schmidt-Heck W, Geffers R, Guthke R, Rinas U, Schuster S, Jahreis K, Kaleta C, G?hler AK, K?kpinar ?. More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli. BMC Syst Biol. 2011 Dec 14; 5:197. PMID: 22168595; PMCID: PMC3265435.
      Citations: 21     Fields:    Translation:Cells
    65. Kaleta C, Werner S, Guthke R, Ristow M, Schuster S, de Figueiredo LF. In silico evidence for gluconeogenesis from fatty acids in humans. PLoS Comput Biol. 2011 Jul; 7(7):e1002116. PMID: 21814506; PMCID: PMC3140964.
      Citations: 11     Fields:    Translation:HumansCells
    66. Wessely F, Bartl M, Guthke R, Li P, Schuster S, Kaleta C. Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs. Mol Syst Biol. 2011 Jul 19; 7:515. PMID: 21772263; PMCID: PMC3159982.
      Citations: 51     Fields:    Translation:Cells
    67. Schuster S, de Figueiredo LF, Schroeter A, Kaleta C. Combining metabolic pathway analysis with Evolutionary Game Theory: explaining the occurrence of low-yield pathways by an analytic optimization approach. Biosystems. 2011 Aug; 105(2):147-53. PMID: 21620931.
      Citations: 13     Fields:    Translation:Cells
    68. Kaleta C, Heiland I, Klamt S, Schuster S, de Figueiredo LF. Special issue: integration of OMICs datasets into metabolic pathway analysis. Biosystems. 2011 Aug; 105(2):107-8. PMID: 21619911.
      Citations: 1     Fields:    
    69. Beuster G, Zarse K, Kaleta C, Kiehntopf M, Steinberg P, Schuster S, Ristow M, Thierbach R. Inhibition of alanine aminotransferase in silico and in vivo promotes mitochondrial metabolism to impair malignant growth. J Biol Chem. 2011 Jun 24; 286(25):22323-30. PMID: 21540181; PMCID: PMC3121379.
      Citations: 24     Fields:    Translation:AnimalsCells
    70. Schuster S, Kaleta C, Sch?uble S. Hands-on metabolism analysis of complex biochemical networks using elementary flux modes. Methods Enzymol. 2011; 500:437-56. PMID: 21943910.
      Citations: 1     Fields:    Translation:HumansAnimalsCells
    71. Schuster S, Kaleta C, de Figueiredo LF. Predicting novel pathways in genome-scale metabolic networks. Biochem Soc Trans. 2010 Oct; 38(5):1202-5. PMID: 20863284.
      Citations: 4     Fields:    
    72. Schuster S, Jahreis K, Guthke R, Nikolajewa S, Kaleta C, G?hler A. Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst Biol. 2010 Aug 18; 4:116. PMID: 20718955; PMCID: PMC2936295.
      Citations: 18     Fields:    Translation:Cells
    73. Centler F, Kaleta C, Speroni di Fenizio P, Dittrich P. A parallel algorithm to compute chemical organizations in biological networks. Bioinformatics. 2010 Jul 15; 26(14):1788-9. PMID: 20501552.
      Citations: 3     Fields:    
    74. Kenanov D, Kaleta C, Petzold A, Hoischen C, Diekmann S, Siddiqui RA, Schuster S. Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis. FEBS J. 2010 Feb; 277(4):1023-34. PMID: 20088879.
      Citations: 4     Fields:    Translation:Cells
    75. de Figueiredo LF, Schuster S, Kaleta C, Fell DA. Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics. 2009 Dec 15; 25(24):3330-1. PMID: 19825797.
      Citations: 2     Fields:    Translation:Cells
    76. de Figueiredo LF, Podhorski A, Rubio A, Kaleta C, Beasley JE, Schuster S, Planes FJ. Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinformatics. 2009 Dec 01; 25(23):3158-65. PMID: 19793869.
      Citations: 68     Fields:    Translation:Cells
    77. Kaleta C, Schuster S, de Figueiredo LF. Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns. Genome Res. 2009 Oct; 19(10):1872-83. PMID: 19541909; PMCID: PMC2765277.
      Citations: 40     Fields:    Translation:Cells
    78. Kaleta C, Richter S, Dittrich P. Using chemical organization theory for model checking. Bioinformatics. 2009 Aug 01; 25(15):1915-22. PMID: 19468053; PMCID: PMC2712341.
      Citations: 6     Fields:    
    79. Schuster S, Kaleta C, Fell DA, de Figueiredo LF. Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics. 2009 Jan 01; 25(1):152-8. PMID: 19117076.
      Citations: 10     Fields:    Translation:HumansCells
    80. Schuster S, Kaleta C, Fell DA, de Figueiredo LF. Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinformatics. 2008 Nov 15; 24(22):2615-21. PMID: 18806269.
      Citations: 10     Fields:    Translation:HumansCells
    81. Centler F, Kaleta C, di Fenizio PS, Dittrich P. Computing chemical organizations in biological networks. Bioinformatics. 2008 Jul 15; 24(14):1611-8. PMID: 18480100.
      Citations: 11     Fields:    Translation:HumansAnimalsCells
    82. Kaleta C, Centler F, di Fenizio PS, Dittrich P. Phenotype prediction in regulated metabolic networks. BMC Syst Biol. 2008 Apr 25; 2:37. PMID: 18439260; PMCID: PMC2443871.
      Citations: 6     Fields:    Translation:Cells
    83. Liang C, Kaleta C, Hoffmann E, Kuznetsov S, Hecker M, Griffiths G, Schuster S, Dandekar T, Schwarz R, K?hnel M. Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinformatics. 2007 Aug 28; 8:313. PMID: 17725829; PMCID: PMC2020486.
      Citations: 29     Fields:    
    84. Kaleta C, Centler F, Dittrich P. Analyzing molecular reaction networks: from pathways to chemical organizations. Mol Biotechnol. 2006 Oct; 34(2):117-23. PMID: 17172657.
      Citations: 6     Fields:    Translation:Cells
    85. Czajka S, Kaleta C, Trzcinski K, G?rska-Kowalska J. [2 cases of pulmonary lesions caused by atypical mycobacteria (Myc. gastri)]. Pneumonol Pol. 1979 Feb; 47(2):121-6. PMID: 432113.
      Citations: 1     Fields:    Translation:HumansCells
    86. Czajka S, Kaleta C, Lechowicz M, Lewicka H, Telichowski J, Mr?z-Czajka D, G?rska-Kowalska J. [Epidemiological and clinical aspects of atypical mycobacterioses in the Rzesz?w region]. Pneumonol Pol. 1978 Jan; 46(1):9-18. PMID: 628623.
      Citations:    Fields:    Translation:HumansCells
    87. Jahr H, Schmidt S, Gottschling D, Wilke B, Kansy H, Kaleta C, Pieper I, Z?hlke H. Catabolism of proinsulin and insulin. Proteolytic activities in Langerhans islets of rat and mice pancreas in vitro. Acta Biol Med Ger. 1974; 33(4):407-18. PMID: 4377377.
      Citations: 1     Fields:    Translation:Animals

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