Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

e.g. CCGA
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Petra Bacher

Prof.
Christian-Albrechts-University Kiel
Institute for Clinical Molecular Biology & Institute for Immunology
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Martini GR, Tikhonova E, Rosati E, DeCelie MB, Sievers LK, Tran F, Lessing M, Bergfeld A, Hinz S, Nikolaus S, K?mpers J, Matysiak A, Hofmann P, Saggau C, Schneiders S, Kamps AK, Jacobs G, Lieb W, Maul J, Siegmund B, Seegers B, Hinrichsen H, Oberg HH, Wesch D, Bereswill S, Heimesaat MM, Rupp J, Kniemeyer O, Brakhage AA, Brunke S, Hube B, Aden K, Franke A, Iliev ID, Scheffold A, Schreiber S, Bacher P. Selection of cross-reactive T cells by commensal and food-derived yeasts drives cytotoxic TH1 cell responses in Crohn's disease. Nat Med. 2023 Sep 25. PMID: 37749331.
      Citations: 3     Fields:    Translation:HumansCells
    2. Eschenhagen PN, Bacher P, Grehn C, Mainz JG, Scheffold A, Schwarz C. Proliferative activity of antigen-specific CD154+ T cells against bacterial and fungal respiratory pathogens in cystic fibrosis decreases after initiation of highly effective CFTR modulator therapy. Front Pharmacol. 2023; 14:1180826. PMID: 37408761; PMCID: PMC10318131.
      Citations:    
    3. ElAbd H, Bacher P, Tholey A, Lenz TL, Franke A. Challenges and opportunities in analyzing and modeling peptide presentation by HLA-II proteins. Front Immunol. 2023; 14:1107266. PMID: 37063883; PMCID: PMC10090296.
      Citations:    Fields:    Translation:HumansCells
    4. Zeng S, Rosati E, Saggau C, Messner B, Chu H, Duan Y, Hartmann P, Wang Y, Ma S, Huang WJM, Lee J, Lee SM, Carvalho-Gontijo R, Zhang V, Hoffmann JP, Kolls JK, Raz E, Brenner DA, Kisseleva T, LeibundGut-Landmann S, Bacher P, St?rkel P, Schnabl B. Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease. Cell Host Microbe. 2023 03 08; 31(3):389-404.e7. PMID: 36893735; PMCID: PMC10039706.
      Citations: 3     Fields:    Translation:AnimalsCells
    5. Hohnstein T, Lozza L, Schwarz C, Eschenhagen P, Schmidt H, Iwert C, Grehn C, Roehmel J, Steinke E, Stahl M, Tikhonova E, Rosati E, Stervbo U, Babel N, Mainz JG, Wisplinghoff H, Ebel F, Jia LJ, Blango MG, Hortschansky P, Brunke S, Hube B, Brakhage AA, Kniemeyer O, Scheffold A, Bacher P. Antigen specificity and cross-reactivity drive functionally diverse anti-Aspergillus fumigatus T cell responses in cystic fibrosis. J Clin Invest. 2023 03 01; 133(5). PMID: 36701198; PMCID: PMC9974102.
      Citations: 4     Fields:    Translation:Animals
    6. Zeng S, Hartmann P, Park M, Duan Y, Lang S, Llorente C, Wang Y, Cabr? N, Fouts DE, Bacher P, Jung WH, St?rkel P, Schnabl B. Malassezia restricta promotes alcohol-induced liver injury. Hepatol Commun. 2023 02 01; 7(2):e0029. PMID: 36706195; PMCID: PMC9988279.
      Citations: 4     Fields:    Translation:Animals
    7. Degenhardt F, Ellinghaus D, Juzenas S, Wendorff M, Uellendahl-Werth F, ElAbd H, Arora J, Wacker EM, Wienbrandt L, Palom A, Garcia-Fernandez AE, Blanco-Grau A, Zanella A, Holten AR, Bandera A, Cherubini A, Gerussi A, Ramirez A, Nebel A, Barreira A, Ganna A, Gori A, Lind A, Tanck A, Hinney A, Fracanzani AL, Peschuck A, Cavallero A, Dyrhol-Riise AM, Ruello A, Muscatello A, Pesenti A, Rando-Segura A, Schmidt A, Bellinghausen C, Scollo C, Gassner C, Paccapelo C, Lehmann C, Angelini C, COVICAT study group, Aachen Study (COVAS), Bianco C, Cea C, Sancho C, Hoff DAL, Galimberti D, Prati D, Haschka D, Toapanta D, Sandoval E, Binatti E, Scarpini E, Urrechaga E, Pontali E, Reverter E, Arana-Arri E, Ceriotti F, Malvestiti F, Medrano FJ, Hanses F, Hemmrich-Stanisak G, Bellani G, Grasselli G, Pezzoli G, Costantino G, Albano G, Bellelli G, Citerio G, Foti G, Lamorte G, Baselli G, Kurihara H, Neb H, Kurth I, Pink I, Holter JC, Rybniker J, Dopazo J, Bergan J, Barretina J, Goikoetxea J, Fazaal J, Risnes K, Banasik K, Tonby K, Sumoy L, Terranova L, Knopp L, Gustad LT, Garbarino L, Santoro L, Ostadreza M, Intxausti M, Berger MM, Schaefer M, Niemi MEK, Carrabba M, Figuera Basso ME, Valsecchi MG, Vehreschild MJGT, Manunta M, Acosta-Herrera M, Baldini M, Grimsrud MM, Cornberg M, Castoldi M, Cordioli M, D'Amato M, Augustin M, Tomasi M, Seilmaier MJ, Joannidis M, Wittig M, Mazzocco M, Ciccarelli M, Bocciolone M, Miozzo M, Chueca N, Montano N, Braun N, Marx N, Norwegian SARS-CoV-2 Study group, Witzke O, Palmieri O, Pa Study Group, Faverio P, Preatoni P, Bonfanti P, Omodei P, Castro P, Hoffmann P, Rosenstiel P, Schommers P, Ferrer R, Gualtierotti R, Carpani R, Ciesek S, May S, Marsal S, Pigazzini S, Klein S, Pelusi S, Wilfling S, Bosari S, Volland S, Raychaudhuri S, Schreiber S, Heilmann-Heimbach S, Dudman S, Wesse T, Zheng T, STORM Study group, The Humanitas Task Force, The Humanitas Gavazzeni Task Force, Eggermann T, Illig T, Brenner T, Pumarola T, Feldt T, Folseraas T, Monzani V, Keitel V, Kopfnagel V, Andrade V, Albrecht W, Peter W, Yi X, Khodamoradi Y, Latiano A, Bacher P, Tran F, Ludwig KU, Invernizzi P, Hov JR, Valenti L, Karlsen TH, Franke A, Lenning OB, Myhre R, Vadla MS, Garrido Chercoles A, Mantovani A, Protti A, Aghemo A, Lleo A, Biondi A, Caballero-Garralda A, Carreras Nolla A, Voza A, Cortes B, Nafria-Jimenez B, Schaefer B, Maj C, Herr C, Spinner CD, Hu C, Cappadona C, Azzolini E, Paraboschi EM, Contro E, Martinelli-Boneschi F, Peyvandi F, Blasi F, Cardamone G, My I, de Rojas I, Afset JE, Schneider J, Gaede KI, Heggelund L, Bettini LR, Nkambule L, Cazzaniga M, Cecconi M, Dreher M, Imaz Ayo N, Blay N, Ludwig N, Cornely OA, Tentorio P, Bals R, Badalamenti S, Bombace S, Aliberti S, Gonzalez Cejudo T, Rimoldi V, Farre X, Goerg S, Koehler P, Zoller H, Duga S, Asselta R, de Cid R, Lerga-Jaso J, Maya-Miles D, R?hlemann MC, ?zer O, Blandino Ortiz A, de Salazar A, Ruiz A, Mayer A, Braun A, Teles A, Kildal AB, Gl?ck A, Juli? A, Solier A, Mateos B, Jensen B, Ferrando C, de la Horra C, Quereda C, Skurk C, Thibeault C, Lange C, Azuure C, Jim?nez D, Pesta?a D, Mu?iz-Diaz E, Helbig ET, Casalone E, Calder?n EJ, Navas E, Sollig?rd E, Aziz F, Garcia F, Garc?a S?nchez F, Kurth F, Mesonero F, Rodriguez-Frias F, M?ller F, Matullo G, Hern?ndez I, Galv?n-Femenia I, Heyckendorf J, K?ssens J, Dam?s JK, Altm?ller J, Ampuero J, Mart?n J, Erdmann J, Banales JM, Badia JR, Walter J, Hern?ndez Quero J, Delgado J, Guerrero JM, Kraft J, Schr?der J, M?ller KE, Garcia-Etxebarria K, Izquierdo-Sanchez L, Sander LE, Lippert LJ, T?llez L, Roade L, Kogevinas M, Riveiro-Barciela M, Guti?rrez-Stampa MA, Hernandez-Tejero M, D'Angi? M, N?then MM, Marqui? M, Boada M, Rodr?guez-Gand?a M, Mart?nez N, et al. Detailed stratified GWAS analysis for severe COVID-19 in four European populations. Hum Mol Genet. 2022 11 28; 31(23):3945-3966. PMID: 35848942; PMCID: PMC9703941.
      Citations: 28     Fields:    Translation:HumansCells
    8. Geisen UM, Rose R, Neumann F, Ciripoi M, Vullriede L, Reid HM, Berner DK, Bertoglio F, Hoff P, Hust M, Longardt AC, Lorentz T, Martini GR, Saggau C, Schirmer JH, Schubert M, S?mb?l M, Tran F, Vo? M, Zeuner R, Morrison PJ, Bacher P, Fickenscher H, Gerdes S, Peipp M, Schreiber S, Krumbholz A, Hoyer BF. The long term vaccine-induced anti-SARS-CoV-2 immune response is impaired in quantity and quality under TNFa blockade. J Med Virol. 2022 Dec; 94(12):5780-5789. PMID: 35945627; PMCID: PMC9538219.
      Citations: 8     Fields:    Translation:HumansCellsPHPublic Health
    9. Saggau C, Martini GR, Rosati E, Meise S, Messner B, Kamps AK, Bekel N, Gigla J, Rose R, Vo? M, Geisen UM, Reid HM, S?mb?l M, Tran F, Berner DK, Khodamoradi Y, Vehreschild MJGT, Cornely O, Koehler P, Krumbholz A, Fickenscher H, Kreuzer O, Schreiber C, Franke A, Schreiber S, Hoyer B, Scheffold A, Bacher P. The pre-exposure SARS-CoV-2-specific T?cell repertoire determines the quality of the immune response to vaccination. Immunity. 2022 10 11; 55(10):1924-1939.e5. PMID: 35985324; PMCID: PMC9372089.
      Citations: 14     Fields:    Translation:HumansCellsPHPublic Health
    10. Krieger D, Bauer T, Mantei A, Meyer T, Sch?rmann M, Be?ler C, Bias H, Bacher P, Helmuth J, Volk HD, Sch?rmann D, Scheffold A, Meisel C. Mycobacterium tuberculosis-specific CD4 T-cell scoring discriminates tuberculosis infection from disease. Eur Respir J. 2022 07; 60(1). PMID: 35618277; PMCID: PMC9329623.
      Citations: 2     Fields:    Translation:HumansCells
    11. Pogorelyy MV, Rosati E, Minervina AA, Mettelman RC, Scheffold A, Franke A, Bacher P, Thomas PG. Resolving SARS-CoV-2 CD4+ T?cell specificity via reverse epitope discovery. Cell Rep Med. 2022 08 16; 3(8):100697. PMID: 35841887; PMCID: PMC9247234.
      Citations: 17     Fields:    Translation:HumansCells
    12. Rohmann N, Munthe L, Schlicht K, Geisler C, Demetrowitsch TJ, Bang C, Jensen-Kroll J, Bacher P, Franke A, Schwarz K, Schulte DM, Laudes M, T?rk K. Differential Effects of Obesity, Hyperlipidaemia, Dietary Intake and Physical Inactivity on Type I versus Type IV Allergies. Nutrients. 2022 Jun 05; 14(11). PMID: 35684151; PMCID: PMC9182605.
      Citations:    Fields:    Translation:Humans
    13. Bacher P, Scheffold A, Hoffman SL, Ibanez J, Fendel R, Lorenz FR, Granados-Bayon P, Br?ckner S, Esen M, Sulyok M, Sulyok Z, Borrmann S, Kremsner PG, Mordm?ller B. Efficacy, T cell activation and antibody responses in accelerated Plasmodium falciparum sporozoite chemoprophylaxis vaccine regimens. NPJ Vaccines. 2022 May 31; 7(1):59. PMID: 35641527; PMCID: PMC9156686.
      Citations: 3     
    14. Rosati E, Rios Martini G, Pogorelyy MV, Minervina AA, Degenhardt F, Wendorff M, Sari S, Mayr G, Fazio A, Dowds CM, Hauser C, Tran F, Pochhammer J, Salnikova MA, Jaeckel C, Gigla JB, Sabet SS, Schiminsky E, Rosenstiel PC, Scheffold A, Thomas PG, Lieb W, Bokemeyer B, Witte M, Aden K, Hendricks A, Schafmayer C, Egberts JH, Mamedov IZ, Bacher P, Franke A, von Sch?nfels W, H?benthal M, Schreiber S. A novel unconventional T cell population enriched in Crohn's disease. Gut. 2022 11; 71(11):2194-2204. PMID: 35264446; PMCID: PMC9554086.
      Citations: 14     Fields:    Translation:HumansCells
    15. Lozza L, Heinrich F, Bacher P, Alvarez-Simon D, Bickenbach AR, Mockel-Tenbrinck N, Scheffold A, Ahlers J, Mantei A, St?ber M, Hohnstein T, Menzel L, Y?z SG, Weidinger C, K?hl AA, Siegmund B, Maul J, Neumann C. A Notch/STAT3-driven Blimp-1/c-Maf-dependent molecular switch induces IL-10 expression in human CD4+ T cells and is defective in Crohn?s disease patients. Mucosal Immunol. 2022 03; 15(3):480-490. PMID: 35169232; PMCID: PMC9038525.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    16. Cossarizza A, Chang HD, Radbruch A, Abrignani S, Addo R, Andreata F, Annunziato F, Bari S, Barros-Martins J, Baumjohann D, Beccaria CG, Boardman DA, Borger J, Brockmann L, Burns M, Cameron G, Chang Y, Christakou E, Cook L, Corbett AJ, Cornelis R, Cosmi L, Davey MS, De Biasi S, De Simone G, Del Zotto G, Delacher M, Di Rosa F, Dong J, Dress RJ, Dutertre CA, Eckle SBG, Evrard M, Falk CS, Feuerer M, Fillatreau S, Follo M, Foulds GA, Gagliani N, Galletti G, Gangaev A, Garbi N, Geginat J, Gherardin NA, Gibellini L, Ginhoux F, Godfrey DI, Gruarin P, Haftmann C, Harpur CM, Hayday AC, Heine G, Huang Q, Huber S, Huber JE, Huehn J, Hundemer M, Hwang WYK, Iannacone M, Ivison SM, Jani PK, Keller B, Kessler N, Ketelaars S, Knop L, Koay HF, Kriegsmann K, Kristyanto H, Krueger A, Kuehne JF, Kunze-Schumacher H, Kvistborg P, Kwok I, Latorre D, Lenz D, Levings MK, Lino AC, Liotta F, Long HM, Lugli E, MacDonald KN, Maggi L, Maini MK, Mair F, Manta C, Manz RA, Mashreghi MF, Mazzoni A, McCluskey J, Mei HE, Melchers F, Monin L, Multhoff G, Muscate F, Natalini A, Neumann K, Ng LG, Niedobitek A, Niemz J, Almeida LN, Notarbartolo S, Pallett LJ, Patel AA, Percin GI, Peruzzi G, Pinti M, Pockley AG, Prinz I, Pujol-Autonell I, Pulvirenti N, Quinn KM, Rhys H, Rodrigo MB, Romagnani C, Sakaguchi S, Sanderink L, Sandrock I, Scherer HU, Schildberg FA, Schulz AR, Schulze J, Simonetti S, Sitnik KM, Stehle C, Szelinski F, Tan L, Tarnok A, Tornack J, Tree TIM, van Beek JJP, van de Veen W, van Gisbergen K, Vasco C, Verheyden NA, von Borstel A, Ward-Hartstonge KA, Warnatz K, Waskow C, Wiedemann A, Wilharm A, Wing J, Wirz O, Yang JHM, Yang J, Di Santo J, Akdis M, Andr? I, Arranz E, Bacher P, Barnaba V, Bernardo D, B?ttcher C, Busch DH, Cammarata I, Cassotta A, Chirdo FG, Cicin-?ain L, Diefenbach A, D?rner T, Eede P, Fiz-Lopez A, Fr?bel J, Garrote JA, Hansmann L, Hern?ndez DC, Herrmann M, Hoelsken O, J?ck HM, Knopf J, Kobow K, Melzer S, Mielenz D, Moretta L, Mu?oz LE, Mu?oz-Ruiz M, Ostendorf L, Pracht K, Quatrini L, Radbruch H, Saggau C, Sallusto F, Schauer C, Scheffold A, Schiemann M, Schober K, Schoen J, Schuh W, Sch?ler T, Schulz S, Singh J, Stark R, Starossom S, Wittner J. Guidelines for the use of flow cytometry and cell sorting in immunological studies (third edition). Eur J Immunol. 2021 12; 51(12):2708-3145. PMID: 34910301.
      Citations: 90     Fields:    Translation:HumansAnimals
    17. Hansen BT, Bacher P, Eiz-Vesper B, Heckl SM, Klapper W, Koch K, Maecker-Kolhoff B, Baldus CD, Fransecky L. Adoptive Cell Transfer of Allogeneic Epstein-Barr Virus-Specific T Lymphocytes for Treatment of Refractory EBV-Associated Posttransplant Smooth Muscle Tumors: A Case Report. Front Immunol. 2021; 12:727814. PMID: 34925312; PMCID: PMC8677671.
      Citations: 2     Fields:    Translation:HumansCells
    18. Geisen UM, Tran F, Berner DK, Reid HM, Vullriede L, Ciripoi M, Longardt AC, Hoff P, Morrison PJ, Schneider VE, Zeuner R, Schirmer JH, Steinbach A, Nikolaus S, Gerdes S, Schreiber S, Bacher P, Hoyer BF, S?mb?l M. Humoral protection to SARS-CoV2 declines faster in patients on TNF alpha blocking therapies. RMD Open. 2021 12; 7(3). PMID: 34880128; PMCID: PMC8655347.
      Citations: 11     Translation:Humans
    19. Rosati E, Pogorelyy MV, Minervina AA, Scheffold A, Franke A, Bacher P, Thomas PG. Characterization of SARS-CoV-2 public CD4+ a? T cell clonotypes through reverse epitope discovery. bioRxiv. 2021 Nov 22. PMID: 34845450; PMCID: PMC8629193.
      Citations: 1     
    20. Stervbo U, Babel N, M?lder F, Loyal L, Bacher P, Rahmann S. Rapid T-cell receptor interaction grouping with ting. Bioinformatics. 2021 Oct 25; 37(20):3444-3448. PMID: 33983394.
      Citations:    Fields:    
    21. ElAbd H, Degenhardt F, Koudelka T, Kamps AK, Tholey A, Bacher P, Lenz TL, Franke A, Wendorff M. Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data. BMC Bioinformatics. 2021 Aug 17; 22(1):405. PMID: 34404349; PMCID: PMC8369717.
      Citations: 2     Fields:    Translation:Humans
    22. Bamidis AD, Koehler P, di Cristanziano V, Rasche K, Demirel B, Bacher P, Hallek M, Kochanek M, Klein F, Hofmann SC, Wesselmann U, Kofler DM. First manifestation of adult-onset Still's disease after COVID-19. Lancet Rheumatol. 2021 May; 3(5):e319-e321. PMID: 33817663; PMCID: PMC7997647.
      Citations: 23     
    23. Zhao Y, Kilian C, Turner JE, Bosurgi L, Roedl K, Bartsch P, Gnirck AC, Cortesi F, Hellmig M, Enk LUB, Hausmann F, Borchers A, Wong MN, Paust HJ, Siracusa F, Scheibel N, Herrmann M, Rosati E, Bacher P, Kylies D, Jarczak D, Pfefferle S, Steurer S, Zur-Wiesch JS, Puelles VG, Sperhake JP, Addo MM, Lohse AW, Binder M, Huber S, Huber TB, Kluge S, Bonn S, Panzer U, Gagliani N, Krebs CF, Schulthei? C, L?tgehetmann M. Clonal expansion and activation of tissue-resident memory-like Th17 cells expressing GM-CSF in the lungs of severe COVID-19 patients. Sci Immunol. 2021 02 23; 6(56). PMID: 33622974; PMCID: PMC8128299.
      Citations: 78     Fields:    Translation:HumansCells
    24. Dao LM, Machule ML, Hoffmann J, Ly LT, Wegner F, Bacher P, Scheffold A, Pr?ss H. Decreased inflammatory cytokine production of antigen-specific CD4+ T?cells in NMDA receptor encephalitis. J Neurol. 2021 Jun; 268(6):2123-2131. PMID: 33442772; PMCID: PMC8179900.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    25. Saggau C, Scheffold A, Bacher P. Flow Cytometric Characterization of Human Antigen-Reactive T-Helper Cells. Methods Mol Biol. 2021; 2285:141-152. PMID: 33928550.
      Citations: 6     Fields:    Translation:HumansCells
    26. Abdirama D, Bacher P, Hiepe F, Tesch S, Grie?bach AS, Brand HA, Goerlich N, Humrich JY, Riemekasten G, Enghard P. Identification and characterization of antigen-specific CD4+ T cells targeting renally expressed antigens in human lupus nephritis with two independent methods. Sci Rep. 2020 12 04; 10(1):21312. PMID: 33277543; PMCID: PMC7718878.
      Citations: 6     Fields:    Translation:HumansCells
    27. Bacher P, Rosati E, Martini GR, Saggau C, Schiminsky E, Wieters I, Khodamoradi Y, Eberhardt F, Vehreschild MJGT, Neb H, Sonntagbauer M, Conrad C, Tran F, Rosenstiel P, Augustin M, Rybniker J, Kochanek M, Koehler P, Franke A, Scheffold A, Esser D, Dargvainiene J, Schr?der I, Markewitz R, Wandinger KP, Leypoldt F, Cornely OA. Low-Avidity CD4+ T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19. Immunity. 2020 12 15; 53(6):1258-1271.e5. PMID: 33296686; PMCID: PMC7689350.
      Citations: 158     Fields:    Translation:HumansCellsPHPublic Health
    28. Bernardes JP, Mishra N, Tran F, Bahmer T, Best L, Blase JI, Bordoni D, Geisen U, Josephs-Spaulding J, Rosati E, Aschenbrenner AC, Bacher P, Baran N, Boysen T, Bruse N, Elke G, Ellinghaus D, Fischer J, Forster M, Franke A, Frey N, Friedrichs A, Hamm J, Hinrichsen F, Hoeppner MP, Imm S, Kaiser S, Kan YH, Knoll R, Lange C, Laue G, Lindner M, Marinos G, Nattermann J, Noth R, Pickkers P, Rabe KF, Schaffarzyk A, Scheffold A, Schulte-Schrepping J, Schunk D, Skowasch D, Ulas T, Wittig M, Zimmermann J, Hoyer BF, Kaleta C, Heyckendorf J, Kox M, Rybniker J, Schreiber S, Schultze JL, Rosenstiel P, HCA Lung Biological Network, Deutsche COVID-19 Omics Initiative (DeCOI), Franzenburg J, K?hler P, K?nstner A, Brandt B, D?rr J, Dr?ger A, Franzenburg S, Fu? J, Gl?ck A, Junker R, Lier C, Markewitz R, Renz A, R?cken C, Rupp J, Wandinger KP, Busch H. Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19. Immunity. 2020 12 15; 53(6):1296-1314.e9. PMID: 33296687; PMCID: PMC7689306.
      Citations: 183     Fields:    Translation:HumansCells
    29. Jiang L, Fan JG, Fouts DE, Bacher P, Schnabl B, St?rkel P. The gut mycobiome: a novel player in chronic liver diseases. J Gastroenterol. 2021 Jan; 56(1):1-11. PMID: 33151407; PMCID: PMC7819863.
      Citations: 17     Fields:    Translation:Humans
    30. Scheffold A, Bacher P, LeibundGut-Landmann S. T cell immunity to commensal fungi. Curr Opin Microbiol. 2020 12; 58:116-123. PMID: 33120172.
      Citations: 15     Fields:    Translation:HumansAnimalsCells
    31. Scheffold A, Bacher P. Anti-fungal T cell responses in the lung and modulation by the gut-lung axis. Curr Opin Microbiol. 2020 08; 56:67-73. PMID: 32679448.
      Citations: 5     Fields:    Translation:HumansAnimalsCells
    32. Seif M, Springer J, Schmidt S, Ebner F, Rosen K, Kniemeyer O, Brakhage AA, L?ffler J, Schlosser J, Scharek-Tedin L, Scheffold A, Bacher P, K?hl AA, R?sler U, Hartmann S. The domestic pig as human-relevant large animal model to study adaptive antifungal immune responses against airborne Aspergillus fumigatus. Eur J Immunol. 2020 11; 50(11):1712-1728. PMID: 32558930.
      Citations: 3     Fields:    Translation:HumansAnimalsCells
    33. von Spee-Mayer C, Radbruch A, Abdirama D, Tesch S, Grie?bach AS, Humrich JY, Stervbo U, Babel N, Meisel C, Alexander T, Biesen R, Bacher P, Scheffold A, Eckardt KU, Hiepe F, Burmester GR, Riemekasten G, Enghard P. Nuclear antigen-reactive CD4+ T cells expand in active systemic lupus erythematosus, produce effector cytokines, and invade the kidneys. Kidney Int. 2021 01; 99(1):238-246. PMID: 32592813.
      Citations: 16     Fields:    Translation:HumansCells
    34. Aparicio-Soto M, Riedel F, Leddermann M, Kuhl H, Timmermann B, Chudakov DM, Molin S, Thierse HJ, Luch A, Siewert K, Bacher P, Scheffold A, Worm M, Heine G. TCRs with segment TRAV9-2 or a CDR3 histidine are overrepresented among nickel-specific CD4+ T cells. Allergy. 2020 10; 75(10):2574-2586. PMID: 32298488.
      Citations: 10     Fields:    Translation:Cells
    35. Minervina AA, Pogorelyy MV, Komech EA, Karnaukhov VK, Bacher P, Rosati E, Franke A, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM. Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones. Elife. 2020 02 21; 9. PMID: 32081129; PMCID: PMC7060039.
      Citations: 27     Fields:    Translation:HumansCells
    36. Cossarizza A, Chang HD, Radbruch A, Acs A, Agace WW, Aghaeepour N, Almeida LN, Alvisi G, Anderson G, Annunziato F, Anselmo A, Baldari CT, Bari S, Barros-Martins J, Battistini L, Bauer W, Baumgart S, Baumgarth N, Baumjohann D, Baying B, Bebawy M, Becher B, Benes V, Beyaert R, Blanco A, Boardman DA, Borger JG, Borsellino G, Boulais PE, Bradford JA, Brenner D, Brinkman RR, Brooks AES, Bushnell TP, Calzetti F, Cameron G, Cao X, Cardell SL, Casola S, Cassatella MA, Cavani A, Celada A, Chattopadhyay PK, Chow S, Christakou E, Clerici M, Colombo FS, Cook L, Cooke A, Cooper AM, Corbett AJ, Cosma A, Cosmi L, Cumano A, Cvetkovic L, Dang VD, Davey MS, Davies D, De Biasi S, Del Zotto G, Dela Cruz GV, Delacher M, Della Bella S, Dellabona P, Dessing M, Di Santo JP, Diefenbach A, Dieli F, Dolf A, Dress RJ, Dustin M, Dutertre CA, Eckle SBG, Edinger M, Eich M, Engel P, Engelhardt B, Erdei A, Everts B, Evrard M, Falk CS, Fehniger TA, Felipo-Benavent M, Ferry H, Feuerer M, Filby A, Filkor K, Follo M, Foster J, Foulds GA, Frehse B, Frenette PS, Frischbutter S, Fritzsche W, Galbraith DW, Gangaev A, Garbi N, Gaudilliere B, Geginat J, Gerner W, Gherardin NA, Gibellini L, Ginhoux F, Goda K, Godfrey DI, Goodyear CS, Gori A, Grogan JL, Grummitt D, Haftmann C, Hammad H, Hansmann L, Hansson G, Harpur CM, Hauser A, Hauser AE, Haviland DL, Hedley D, Herrera G, Hess C, Hoffmann P, Hogquist K, Holland T, Holmdahl R, Hombrink P, Houston JP, Huang B, Huang FP, Huber JE, Huehn J, Hundemer M, Hunter CA, Hwang WYK, Iannone A, Ingelfinger F, Ivison SM, Jani PK, Jonjic S, Kaiser T, Kalina T, Kamradt T, Kaufmann SHE, Keller B, Ketelaars SLC, Khalilnezhad A, Khan S, Klenerman P, Koay HF, Kolls JK, Kong WT, Korn T, Kriegsmann K, Kristyanto H, Kroneis T, Krueger A, Kukat C, Kunze-Schumacher H, Kurosaki T, Kurts C, Kvistborg P, Kwok I, Landry J, Lantz O, Lanuti P, LaRosa F, Leipold MD, Leung LYT, Levings MK, Lino AC, Liotta F, Liu Y, Ljunggren HG, Lohoff M, Lombardi G, Lopez L, Lovett-Racke AE, Lubberts E, Ludewig B, Lugli E, Lunemann S, Maecker HT, Maggi L, Maguire O, Mair F, Mair KH, Mantovani A, Manz RA, Marshall AJ, Marventano I, Maslinski W, Mattioli AV, Mazzoni A, McCluskey J, McGrath M, McGuire HM, McInnes IB, Mei HE, Melchers F, Melzer S, Mielenz D, Miller SD, Mills KHG, Minderman H, Moore J, Moran B, Moretta L, Mosmann TR, Nakayama T, Nasi M, Neumann K, Ng LG, Niedobitek A, Nourshargh S, Ochel A, Oja A, Ordonez D, Orfao A, Orlowski-Oliver E, Ouyang W, Oxenius A, Palankar R, Panse I, Pattanapanyasat K, Paulsen M, Pavlinic D, Peth C, Piancone F, Pickl WF, Pinti M, Pockley AG, Poon Z, Pracht K, Prinz I, Pucillo CEM, Quataert SA, Quatrini L, Quinn KM, Radstake TRDJ, Rahmig S, Rajwa B, Ravichandran G, Raz Y, Rebhahn JA, Recktenwald D, Reimer D, Reis e Sousa C, Remmerswaal EBM, Richter L, Riddell A, Rieger AM, Robinson JP, Romagnani C, Rubartelli A, Saeys Y, Saito T, Sakaguchi S, Sala-de-Oyanguren F, Samstag Y, Sanderson S, Sandrock I, Santoni A, Saresella M, Schadt L, Scherer HU, Schildberg FA, Schimisky E, Schlitzer A, Schmid S, Schmitt S, Schraivogel D, Schuh W, Schulte R, Schulz AR, Schulz SR, Scott-Algara D, Sester DP, Shankey TV, Simon AK, Sitnik KM, Sozzani S, Speiser DE, Spidlen J, Stahlberg A, Stall AM, Stanley N, Stark R, Stehle C, Steinmetz T, Stockinger H, Takahama Y, Takeda K, Tan L, Tiegs G, Toldi G, Tornack J, Traggiai E, Trebak M, Tree TIM, Trotter J, Trowsdale J, Tsoumakidou M, Urbanczyk S, van de Veen W, van den Broek M, van der Pol E, Van Gassen S, Van Isterdael G, Vento-Asturias S, Vieira P, Voehringer D, von Borstel A, Waisman A, Walker RV, Wallace PK, Wang SA, Wang XM, Ward MD, Ward-Hartstonge KA, Warnatz K, Warnes G, Waskow C, Watson JV, Watzl C, Wegener L, Weisenburger T, Wiedemann A, Wilharm A, Wilkinson RJ, Wing JB, Winkler TH, Wirz OF, Wong A, Wurst P, Yang JHM, Yang J, Yazdanbakhsh M, Yu L, Yue A, Zhang H, Zhao Y, Ziegler SM, Zielinski C, Zychlinsky A, Adam D, et al. Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). Eur J Immunol. 2019 Oct; 49(10):1457-1973. PMID: 31633216; PMCID: PMC7350392.
      Citations: 353     Fields:    Translation:Humans
    37. Steinbach A, Cornely OA, Wisplinghoff H, Schauss AC, Vehreschild JJ, Rybniker J, Hamprecht A, Richter A, Bacher P, Scheffold A, Koehler P. Mould-reactive T cells for the diagnosis of invasive mould infection-A prospective study. Mycoses. 2019 Jul; 62(7):562-569. PMID: 31034691.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    38. Scheffold A, Bacher P. Author Correction: Antigen-specific regulatory T-cell responses against aeroantigens and their role in allergy. Mucosal Immunol. 2019 05; 12(3):842. PMID: 30705376.
      Citations:    Fields:    
    39. Blango MG, Seidel K, Rickerts V, Lozza L, Milleck J, Assenmacher M, Ziegler M, Wisplinghoff H, Knosalla C, Brunke S, Hube B, Kniemeyer O, Brakhage AA, Bacher P, Hohnstein T, Beerbaum E, R?cker M, Kaufmann S, R?hmel J, Eschenhagen P, Grehn C, Stervbo U, Nienen M, Babel N, Cornely OA, Heine G, Worm M, Siegmund B, Maul J, Creutz P, Tabeling C, Ruwwe-Gl?senkamp C, Sander LE, Schwarz C, Scheffold A. Human Anti-fungal Th17 Immunity and Pathology Rely on Cross-Reactivity against Candida albicans. Cell. 2019 03 07; 176(6):1340-1355.e15. PMID: 30799037.
      Citations: 182     Fields:    Translation:HumansAnimalsCells
    40. Bacher P. [Gaps in the regulatory T cell shield generate immunopathologies]. Z Rheumatol. 2018 Dec; 77(10):923-927. PMID: 30302535.
      Citations:    Fields:    Translation:HumansCells
    41. Bacher P, Scheffold A. The effect of regulatory T cells on tolerance to airborne allergens and allergen immunotherapy. J Allergy Clin Immunol. 2018 12; 142(6):1697-1709. PMID: 30527063.
      Citations: 17     Fields:    Translation:HumansAnimalsCells
    42. Voltersen V, Blango MG, Schmidt F, Heinekamp T, Strassburger M, Bacher P, Liu H, Hortschansky P, Nietzsche S, Kniemeyer O, Filler SG, Brakhage AA, Herrmann S, Kr?ger T, Lother J, Weiss E, H?nniger K, Scheffold A, L?ffler J, Krappmann S, Kurzai O, Einsele H, Reichard U. Proteome Analysis Reveals the Conidial Surface Protein CcpA Essential for Virulence of the Pathogenic Fungus Aspergillus fumigatus. mBio. 2018 10 02; 9(5). PMID: 30279286; PMCID: PMC6168859.
      Citations: 30     Fields:    Translation:HumansAnimalsCells
    43. Koehler FC, Cornely OA, Wisplinghoff H, Schauss AC, Salmanton-Garcia J, Ostermann H, Ziegler M, Alex R, Richter A, Koehler P, Bacher P, Scheffold A. Candida-Reactive T Cells for the Diagnosis of Invasive Candida Infection-A Prospective Pilot Study. Front Microbiol. 2018; 9:1381. PMID: 29988394; PMCID: PMC6024001.
      Citations: 5     
    44. Scheffold A, Bacher P. Antigen-specific regulatory T-cell responses against aeroantigens and their role in allergy. Mucosal Immunol. 2018 11; 11(6):1537-1550. PMID: 29858582.
      Citations: 9     Fields:    Translation:HumansAnimalsCells
    45. Nowak A, Lock D, Kaiser A, Scheffold A, Bacher P, Hohnstein T, Vogt K, Gottfreund J, Giehr P, Polansky JK, Sawitzki B, Walter J. CD137+CD154- Expression As a Regulatory T Cell (Treg)-Specific Activation Signature for Identification and Sorting of Stable Human Tregs from In Vitro Expansion Cultures. Front Immunol. 2018; 9:199. PMID: 29467769; PMCID: PMC5808295.
      Citations: 26     Fields:    Translation:HumansCells
    46. Ekmekciu I, von Klitzing E, Neumann C, Bacher P, Scheffold A, Bereswill S, Heimesaat MM. Fecal Microbiota Transplantation, Commensal Escherichia coli and Lactobacillus johnsonii Strains Differentially Restore Intestinal and Systemic Adaptive Immune Cell Populations Following Broad-spectrum Antibiotic Treatment. Front Microbiol. 2017; 8:2430. PMID: 29321764; PMCID: PMC5732213.
      Citations: 24     
    47. Scheffold A, Schwarz C, Bacher P. Fungus-Specific CD4 T Cells as Specific Sensors for Identification of Pulmonary Fungal Infections. Mycopathologia. 2018 Feb; 183(1):213-226. PMID: 29168073.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    48. Cossarizza A, Chang HD, Radbruch A, Annunziato F, Battistini L, Bauer WM, Baumgart S, Berek C, Blanco A, Borsellino G, Boulais PE, Brinkman RR, Bushnell TP, Cao X, Cavani A, Chattopadhyay PK, Chow S, Clerici M, Cooke A, Cosmi L, Cumano A, Dang VD, Davies D, De Biasi S, Del Zotto G, Della Bella S, Dellabona P, Dessing M, Di Santo J, Dieli F, Dolf A, Donnenberg VS, Endl E, Engel P, Engelhardt B, Everts B, Dreher A, Falk CS, Fehniger TA, Filby A, Fillatreau S, Follo M, Foster J, Foulds GA, Frenette PS, Galbraith D, Garbi N, Geginat J, Gibellini L, Goettlinger C, Goodyear CS, Gori A, Grogan J, Gross M, Grummitt D, Hammer Q, Hauser AE, Haviland DL, Hedley D, Holland T, Hombrink P, Houston JP, Huang B, Hunter CA, Iannone A, Jonjic S, Juelke K, Jung S, Kaiser T, Kalina T, Keller B, Khan S, Kroneis T, Kurts C, Kvistborg P, Lannigan J, Lantz O, Larbi A, LeibundGut-Landmann S, Levings MK, Litwin V, Liu Y, Lohoff M, Lombardi G, Lopez L, Lovett-Racke A, Lubberts E, Ludewig B, Lugli E, McGrath M, McInnes I, Mei HE, Melchers F, Melzer S, Mielenz D, Mills K, Mirrer D, Moore J, Moran B, Moretta A, Moretta L, Mosmann TR, Murphy KM, Nakayama T, Nasi M, Nolan J, Nourshargh S, Ouyang W, Oxenius A, Panse I, Peth C, Petriz J, Philips D, Pickl W, Pinti M, Pockley AG, Pucillo C, Quataert SA, Radstake TRDJ, Rajwa B, Rebhahn JA, Recktenwald D, Remmerswaal EBM, Rezvani K, Rico LG, Robinson JP, Romagnani C, Rubartelli A, Ruckert B, Sakaguchi S, Samstag Y, Sanderson S, Scheffold A, Schildberg F, Schimisky E, Schmitt S, Schulz AR, Schumacher T, Scotta C, Shankey TV, Shemer A, Simon AK, Spidlen J, Stall AM, Stark R, Stehle C, Stein M, Steinmetz T, Stockinger H, Takahama Y, Tarnok A, Tian Z, Toldi G, Tornack J, Traggiai E, Trotter J, van der Braber M, Veldhoen M, Vento-Asturias S, Voehringer D, Volk HD, Waisman A, Walker R, Ward MD, Warnatz K, Watson JV, Watzl C, Wegener L, Wing J, Wurst P, Yu L, Yue A, Zhang Q, Zhao Y, Ziegler S, Akdis M, Andr? I, Bacher P, Barnaba V, Becher B, Beisker W, B?scher M, Busch DH, Cheng Q, Cosma A, Deniz G, Diefenbach A, D?rner T, Ehrhardt GRA, Esser C, F?rster I, Garc?a-Godoy MD, Ghoreschi K, Gr?tzkau A, Hahn J, Herrera G, Herrmann M, Hiepe F, Hoyer BF, J?ck HM, J?vega B, Kienh?fer D, Kunkel D, Leipold MD, Maecker HT, Martrus G, Matarese G, Mauer?der C, Mj?sberg J, M?ller S, M?ller W, M?nz C, Multhoff G, Munoz LE, Neud?rfl C, O'Connor JE, Palankar R, Peterson P, Piconese S, Podolska MJ, Ruland J, Sala-de-Oyanguren F, Sawitzki B, Schiemann M, Schmid SA, Schober K, Sch?ler T, Ulrich H, van Lier RAW, Vieira P, von Volkmann K, Warth S, Wiedemann A, Wienands J, Willimsky G, Zimmermann J. Guidelines for the use of flow cytometry and cell sorting in immunological studies. Eur J Immunol. 2017 10; 47(10):1584-1797. PMID: 29023707; PMCID: PMC9165548.
      Citations: 193     Fields:    Translation:HumansAnimalsCells
    49. Ekmekciu I, von Klitzing E, Fiebiger U, Neumann C, Bacher P, Scheffold A, Bereswill S, Heimesaat MM. The Probiotic Compound VSL#3 Modulates Mucosal, Peripheral, and Systemic Immunity Following Murine Broad-Spectrum Antibiotic Treatment. Front Cell Infect Microbiol. 2017; 7:167. PMID: 28529928; PMCID: PMC5418240.
      Citations: 23     Fields:    Translation:AnimalsCells
    50. Ekmekciu I, von Klitzing E, Fiebiger U, Escher U, Neumann C, Bacher P, Scheffold A, K?hl AA, Bereswill S, Heimesaat MM. Immune Responses to Broad-Spectrum Antibiotic Treatment and Fecal Microbiota Transplantation in Mice. Front Immunol. 2017; 8:397. PMID: 28469619; PMCID: PMC5395657.
      Citations: 63     Fields:    
    51. Heinrich F, Nienen M, Vahldieck M, Kollet J, Gadermaier G, Asam C, Assenmacher M, Kniemeyer O, Brakhage AA, Wallner M, Bacher P, Stervbo U, Iwert C, Vogt K, Babel N, Sawitzki B, Schwarz C, Bereswill S, Heimesaat MM, Heine G, Ferreira F, Worm M, Scheffold A. Regulatory T Cell Specificity Directs Tolerance versus Allergy against Aeroantigens in Humans. Cell. 2016 11 03; 167(4):1067-1078.e16. PMID: 27773482.
      Citations: 128     Fields:    Translation:HumansCells
    52. Ebel F, Kniemeyer O, Kr?ger T, Bacher P, Scheffold A, Luo T, Strassburger M, Brakhage AA. Immunoproteomics of Aspergillus for the development of biomarkers and immunotherapies. Proteomics Clin Appl. 2016 10; 10(9-10):910-921. PMID: 27312145.
      Citations: 9     Fields:    Translation:HumansAnimalsPHPublic Health
    53. Jochheim-Richter A, Mockel-Tenbrink N, Kniemeyer O, Wingenfeld E, Alex R, Ortigao A, Karpova D, Lehrnbecher T, Hamprecht A, Cornely O, Brakhage AA, Assenmacher M, Bacher P, Ullmann AJ, Bonig H, Scheffold A. Clinical-scale isolation of the total Aspergillus fumigatus-reactive T-helper cell repertoire for adoptive transfer. Cytotherapy. 2015 Oct; 17(10):1396-405. PMID: 26188965.
      Citations: 13     Fields:    Translation:HumansAnimalsCells
    54. Bacher P, Scheffold A. New technologies for monitoring human antigen-specific T cells and regulatory T cells by flow-cytometry. Curr Opin Pharmacol. 2015 Aug; 23:17-24. PMID: 26004366.
      Citations: 17     Fields:    Translation:HumansCells
    55. Steinbach A, Kniemeyer O, Hamprecht A, Assenmacher M, Vehreschild MJ, Brakhage AA, Cornely OA, Scheffold A, Bacher P, Vehreschild JJ. Fungus-specific CD4(+) T cells for rapid identification of invasive pulmonary mold infection. Am J Respir Crit Care Med. 2015 Feb 01; 191(3):348-52. PMID: 25635493.
      Citations: 18     Fields:    Translation:HumansCells
    56. Kniemeyer O, Teutschbein J, Wartenberg D, Scharf DH, Koester-Eiserfunke N, Assenmacher M, Brakhage AA, Bacher P, Th?n M, V?disch M, Sch?tte M, D?bel S, Scheffold A. Identification of immunogenic antigens from Aspergillus fumigatus by direct multiparameter characterization of specific conventional and regulatory CD4+ T cells. J Immunol. 2014 Oct 01; 193(7):3332-43. PMID: 25172488.
      Citations: 24     Fields:    Translation:HumansAnimalsCellsCTClinical Trials
    57. Kniemeyer O, Assenmacher M, Rietschel E, Steinbach A, Brakhage AA, Bacher P, Sch?nbrunn A, Sawitzki B, Cornely OA, Thiel A, Scheffold A. Antigen-specific expansion of human regulatory T cells as a major tolerance mechanism against mucosal fungi. Mucosal Immunol. 2014 Jul; 7(4):916-28. PMID: 24301658.
      Citations: 50     Fields:    Translation:HumansAnimalsCells
    58. Bacher P, Scheffold A. Flow-cytometric analysis of rare antigen-specific T cells. Cytometry A. 2013 Aug; 83(8):692-701. PMID: 23788442.
      Citations: 69     Fields:    Translation:HumansAnimalsCells
    59. Bacher P, Schink C, Teutschbein J, Kniemeyer O, Assenmacher M, Brakhage AA, Scheffold A. Antigen-reactive T cell enrichment for direct, high-resolution analysis of the human naive and memory Th cell repertoire. J Immunol. 2013 Apr 15; 190(8):3967-76. PMID: 23479226.
      Citations: 83     Fields:    Translation:HumansAnimalsCells
    60. Bacher P, Giersiefer S, Bach M, Fork C, Sch?mig E, Gr?ndemann D. Substrate discrimination by ergothioneine transporter SLC22A4 and carnitine transporter SLC22A5: gain-of-function by interchange of selected amino acids. Biochim Biophys Acta. 2009 Dec; 1788(12):2594-602. PMID: 19814996.
      Citations: 7     Fields:    Translation:HumansCells

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