Next Generation Sequencing Competence Network

Next Generation Sequencing Competence Network

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Achim Tresch

Prof.
University of Köln
Medicine
Bachemer Straße 86, 50937 Köln, Germany
Köln 50937
+49 221 47896512
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Milchevskaya V, Bugnon P, Ten Buren EBJ, Vanhecke D, Brand F, Tresch A, Buch T. Group size planning for breedings of gene-modified mice and other organisms following Mendelian inheritance. Lab Anim (NY). 2023 08; 52(8):183-188. PMID: 37488410; PMCID: PMC10393774.
      Citations:    Fields:    Translation:Animals
    2. Campos-Martin R, Schmickler S, Goel M, Schneeberger K, Tresch A. Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiol. 2023 05 31; 192(2):821-836. PMID: 36946207; PMCID: PMC10231367.
      Citations:    Fields:    Translation:Humans
    3. Rubio K, Romero-Olmedo AJ, Sarvari P, Swaminathan G, Ranvir VP, Rogel-Ayala DG, Cordero J, G?nther S, Mehta A, Bassaly B, Braubach P, Wygrecka M, Gattenl?hner S, Tresch A, Braun T, Dobreva G, Rivera MN, Singh I, Graumann J, Barreto G. Non-canonical integrin signaling activates EGFR and RAS-MAPK-ERK signaling in small cell lung cancer. Theranostics. 2023; 13(8):2384-2407. PMID: 37215577; PMCID: PMC10196829.
      Citations: 3     Fields:    Translation:Humans
    4. M?llenhoff K, Tresch A. Investigating non-inferiority or equivalence in time-to-event data under non-proportional hazards. Lifetime Data Anal. 2023 07; 29(3):483-507. PMID: 36708450; PMCID: PMC10258187.
      Citations: 1     Fields:    Translation:Humans
    5. Werner DJ, Wenzel N, Abusalim N, Kiesslich R, Baar T, Tresch A, Rey JW. Unmasking lower gastrointestinal bleeding under administration of norepinephrine. World J Radiol. 2022 Dec 28; 14(12):375-383. PMID: 36605886; PMCID: PMC9808013.
      Citations: 1     
    6. Locatelli G, Marques-Ferreira F, Katsoulas A, Kalaitzaki V, Krueger M, Ingold-Heppner B, Walthert S, Sankowski R, Prazeres da Costa O, Dolga A, Huber M, Gold M, Culmsee C, Waisman A, Bechmann I, Milchevskaya V, Prinz M, Tresch A, Becher B, Buch T. IGF1R expression by adult oligodendrocytes is not required in the steady-state but supports neuroinflammation. Glia. 2023 03; 71(3):616-632. PMID: 36394300.
      Citations: 1     Fields:    Translation:AnimalsCells
    7. Hussainy M, Korsching SI, Tresch A. Pseudotime analysis reveals novel regulatory factors for multigenic onset and monogenic transition of odorant receptor expression. Sci Rep. 2022 09 28; 12(1):16183. PMID: 36171231; PMCID: PMC9519747.
      Citations: 1     Fields:    Translation:AnimalsCells
    8. Baar T, Tresch A, D?mcke S, Gressel S, Schwalb B, Dilthey A, Cramer P. RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history. G3 (Bethesda). 2022 05 06; 12(5). PMID: 35253846; PMCID: PMC9073682.
      Citations:    Fields:    Translation:HumansCells
    9. Schlusche AK, Vay SU, Kleinenkuhnen N, Sandke S, Florio M, Huttner W, Tresch A, Roeper J, Rueger MA, Jakovcevski I, Stockebrand M, Isbrandt D, Campos-Mart?n R. Developmental HCN channelopathy results in decreased neural progenitor proliferation and microcephaly in mice. Proc Natl Acad Sci U S A. 2021 08 31; 118(35). PMID: 34429357; PMCID: PMC8536352.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    10. Baar T, Kiesslich R, Wenzel N, Abusalim N, Tresch A, Rey JW, Werner DJ. Endoscopic hemostasis makes the difference: Angiographic treatment in patients with lower gastrointestinal bleeding. World J Gastrointest Endosc. 2021 Jul 16; 13(7):221-232. PMID: 34326943; PMCID: PMC8311471.
      Citations:    
    11. Failmezger H, Zwing N, Tresch A, Korski K, Schmich F. Computational Tumor Infiltration Phenotypes Enable the Spatial and Genomic Analysis of Immune Infiltration in Colorectal Cancer. Front Oncol. 2021; 11:552331. PMID: 33791196; PMCID: PMC8006941.
      Citations: 1     
    12. Schwarzer R, Jiao H, Wachsmuth L, Tresch A, Pasparakis M. FADD and Caspase-8 Regulate Gut Homeostasis and Inflammation by Controlling MLKL- and GSDMD-Mediated Death of Intestinal Epithelial Cells. Immunity. 2020 06 16; 52(6):978-993.e6. PMID: 32362323.
      Citations: 100     Fields:    Translation:AnimalsCells
    13. Failmezger H, Dursun E, Endele M, Poron D, Schroeder T, Krug A, Tresch A, D?mcke S. Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging. Bioinformatics. 2019 07 01; 35(13):2291-2299. PMID: 30452534.
      Citations: 1     Fields:    
    14. Buch T, Moos K, Ferreira FM, Gebhard C, Tresch A, Fr?hlich H. Benefits of a factorial design focusing on inclusion of female and male animals in one experiment. J Mol Med (Berl). 2019 06; 97(6):871-877. PMID: 30980104.
      Citations: 23     Fields:    Translation:Animals
    15. Failmezger H, Lempe J, Khadem N, Cartolano M, Tsiantis M, Tresch A. MowJoe: a method for automated-high throughput?dissected leaf phenotyping. Plant Methods. 2018; 14:27. PMID: 29599815; PMCID: PMC5868070.
      Citations: 2     
    16. Nguyen-Tat M, Cornelius C, Hoffman A, Tresch A, Krey J, Kiesslich R, Galle PR, Rey JW. The Manchester Triage System (MTS): a score for emergency management of patients with acute gastrointestinal bleeding. Z Gastroenterol. 2018 Feb 09. PMID: 29426055.
      Citations:    Fields:    
    17. Rey JW, Haschemi J, Tresch A, Borger D, Kirchner AC, Teubner D, Kiesslich R, Hoffman A, D?mcke S. G-EYE advanced colonoscopy for improved polyp detection rates - a randomized tandem pilot study with different endoscopists. Z Gastroenterol. 2018 Feb 09. PMID: 29426056.
      Citations: 3     Fields:    
    18. Tresch A, Stricker G, Engelhardt A, Schulz D, Schmid M, Gagneur J. GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis. Bioinformatics. 2017 Aug 01; 33(15):2258-2265. PMID: 28369277.
      Citations: 2     Fields:    Translation:HumansAnimalsCells
    19. Engelhardt A, Rieger A, Tresch A, Mansmann U. Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm. Hum Hered. 2016; 82(1-2):1-15. PMID: 28728147.
      Citations:    Fields:    
    20. Karl R, Bergonzi S, Koch M, Kiefer C, Severing E, Tresch A, Coupland G. Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation at FLC orthologues. Mol Ecol. 2017 Jul; 26(13):3437-3457. PMID: 28261921; PMCID: PMC5485006.
      Citations: 27     Fields:    Translation:Animals
    21. Tresch A, Zacher B, Michel M, Schwalb B, Cramer P, Gagneur J. Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN. PLoS One. 2017; 12(1):e0169249. PMID: 28056037; PMCID: PMC5215863.
      Citations: 41     Fields:    Translation:HumansCells
    22. Mehta A, Cordero J, Dobersch S, Romero-Olmedo AJ, Savai R, Chao CM, Fink L, Singh I, Dobreva G, Rapp UR, Ilinskaya ON, Bellusci S, Dammann RH, Braun T, Seeger W, Tresch A, Barreto G, Bodner J, Guzm?n-D?az E, G?nther S, Gattenl?hner S, G?nther A. Non-invasive lung cancer diagnosis by detection of GATA6 and NKX2-1 isoforms in exhaled breath condensate. EMBO Mol Med. 2016 12; 8(12):1380-1389. PMID: 27821429; PMCID: PMC5167131.
      Citations: 12     Fields:    Translation:Humans
    23. Endele M, Schroeder T, Dursun E, Musumeci A, Failmezger H, Wang SH, Tresch A, Krug AB. Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors. Sci Rep. 2016 11 28; 6:37462. PMID: 27892478; PMCID: PMC5124969.
      Citations: 10     Fields:    Translation:AnimalsCells
    24. Schwalb B, Michel M, Zacher B, Fr?hauf K, Demel C, Tresch A, Gagneur J, Cramer P. TT-seq maps the human transient transcriptome. Science. 2016 Jun 03; 352(6290):1225-8. PMID: 27257258.
      Citations: 214     Fields:    Translation:HumansCells
    25. vom Berg J, Tresch A, Palle P, Mair F, Becher B, Beil-Wagner J, D?ssinger G, Schober K, Grandl M, Gerhard M, Busch DH, Buch T. T cell-specific inactivation of mouse CD2 by CRISPR/Cas9. Sci Rep. 2016 Feb 23; 6:21377. PMID: 26903281; PMCID: PMC4763270.
      Citations: 6     Fields:    Translation:AnimalsCells
    26. Glas J, D?mcke S, Zacher B, Poron D, Gagneur J, Tresch A. Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. Nucleic Acids Res. 2016 Mar 18; 44(5):e44. PMID: 26578558; PMCID: PMC4797261.
      Citations: 2     Fields:    Translation:AnimalsCells
    27. Cartolano M, Pieper B, Lempe J, Tattersall A, Huijser P, Tresch A, Darrah PR, Hay A, Tsiantis M. Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proc Natl Acad Sci U S A. 2015 Aug 18; 112(33):10539-44. PMID: 26243877; PMCID: PMC4547220.
      Citations: 28     Fields:    Translation:AnimalsCells
    28. Hoffman A, Murthy S, Pompetzki L, Rey JW, Goetz M, Tresch A, Galle PR, Kiesslich R. Intraprocedural bowel cleansing with the JetPrep cleansing system improves adenoma detection. World J Gastroenterol. 2015 Jul 14; 21(26):8184-94. PMID: 26185393; PMCID: PMC4499364.
      Citations: 3     Fields:    Translation:Humans
    29. Niederberger T, Failmezger H, Uskat D, Poron D, Glauche I, Scherf N, Roeder I, Schroeder T, Tresch A. Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinformatics. 2015 Jun 01; 31(11):1816-23. PMID: 25638814.
      Citations: 7     Fields:    Translation:AnimalsCells
    30. Zacher B, Lidschreiber M, Cramer P, Gagneur J, Tresch A. Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. Mol Syst Biol. 2014 Dec 19; 10:768. PMID: 25527639; PMCID: PMC4300491.
      Citations: 10     Fields:    Translation:HumansAnimalsCells
    31. Rey JW, Deris N, Marquardt JU, Thomaidis T, Moehler M, Kittner JM, Nguyen-Tat M, Tresch A, Goetz M, Mudter J, Neurath MF, Galle PR, Kiesslich R, Hoffman A, D?mcke S, Biesterfeld S. High-definition endoscopy with iScan and Lugol's solution for the detection of inflammation in patients with nonerosive reflux disease: histologic evaluation in comparison with a control group. Dis Esophagus. 2016 Feb-Mar; 29(2):185-91. PMID: 25515856.
      Citations: 8     Fields:    Translation:Humans
    32. D?mcke S, Mansmann U, Tresch A. A novel test for independence derived from an exact distribution of ith nearest neighbours. PLoS One. 2014; 9(9):e107955. PMID: 25275469; PMCID: PMC4183502.
      Citations: 1     Fields:    
    33. Hoffman A, Loth L, Rey JW, Rahman F, Hansen T, Tresch A, Galle PR, Kiesslich R, Goetz M, Niederberger T. High definition plus colonoscopy combined with i-scan tone enhancement vs. high definition colonoscopy for colorectal neoplasia: A randomized trial. Dig Liver Dis. 2014 Nov; 46(11):991-6. PMID: 25151550.
      Citations: 12     Fields:    Translation:Humans
    34. Rey JW, Hansen T, Tresch A, Kramer K, Galle PR, Goetz M, Schuchmann M, Kiesslich R, Hoffman A, D?mcke S. Efficacy of SpyGlass(TM)-directed biopsy compared to brush cytology in obtaining adequate tissue for diagnosis in patients with biliary strictures. World J Gastrointest Endosc. 2014 Apr 16; 6(4):137-43. PMID: 24748921; PMCID: PMC3985154.
      Citations: 8     
    35. Hoffman A, Rey JW, Tresch A, Prazeres da Costa O, Mansmann U, Buch T. Selection of higher order regression models in the analysis of multi-factorial transcription data. PLoS One. 2014; 9(3):e91840. PMID: 24658540; PMCID: PMC3962375.
      Citations:    Fields:    Translation:AnimalsCells
    36. Akman K, Haaf T, Gravina S, Vijg J, Tresch A. Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinformatics. 2014 Jul 01; 30(13):1933-4. PMID: 24618468; PMCID: PMC4071208.
      Citations: 8     Fields:    Translation:Cells
    37. Steffens A, Jaegle B, Tresch A, Jakoby M, H?lskamp M. Processing-body movement in Arabidopsis depends on an interaction between myosins and DECAPPING PROTEIN1. Plant Physiol. 2014 Apr; 164(4):1879-92. PMID: 24525673; PMCID: PMC3982750.
      Citations: 19     Fields:    Translation:HumansAnimalsCells
    38. Demel C, Maier KC, Pirkl N, Martin DE, Cramer P, Tresch A, Eser P, Schwalb B. Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression. Mol Syst Biol. 2014; 10:717. PMID: 24489117; PMCID: PMC4023403.
      Citations: 48     Fields:    Translation:AnimalsCells
    39. Anchang B, Spang R, Beerenwinkel N, Tresch A, D?mcke S, Br?uer J. Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinformatics. 2014 Feb 01; 30(3):414-9. PMID: 24292937.
      Citations: 3     Fields:    Translation:AnimalsCells
    40. Hoffman A, Rey JW, Mueller L, Hansen T, Tresch A, Galle PR, Kiesslich R, Goetz M. Analysis of interobserver variability for endomicroscopy of the gastrointestinal tract. Dig Liver Dis. 2014 Feb; 46(2):140-5. PMID: 24210992.
      Citations: 2     Fields:    Translation:Humans
    41. Pirkl N, Maier KC, Schenk A, Failmezger H, Tresch A, Cramer P, Sun M, Schwalb B. Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels. Mol Cell. 2013 Oct 10; 52(1):52-62. PMID: 24119399.
      Citations: 138     Fields:    Translation:AnimalsCells
    42. Tresch A, Failmezger H, Fr?hlich H. Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinformatics. 2013 Oct 04; 14:292. PMID: 24090185; PMCID: PMC3851277.
      Citations: 5     Fields:    Translation:HumansCells
    43. Hoffman A, Korczynski O, Tresch A, Hansen T, Rahman F, Murthy S, Galle PR, Kiesslich R, Goetz M. Acetic acid compared with i-scan imaging for detecting Barrett's esophagus: a randomized, comparative trial. Gastrointest Endosc. 2014 Jan; 79(1):46-54. PMID: 23953402.
      Citations: 14     Fields:    Translation:Humans
    44. Helfer S, Michalik KM, Witte H, Maier KC, Martin D, Michalke B, Tresch A, Cramer P, Esslinger SM, Schwalb B, F?rstemann K. Drosophila miR-277 controls branched-chain amino acid catabolism and affects lifespan. RNA Biol. 2013 Jun; 10(6):1042-56. PMID: 23669073; PMCID: PMC3904584.
      Citations: 40     Fields:    Translation:AnimalsCells
    45. Failmezger H, Jaegle B, Schrader A, Tresch A, H?lskamp M. Semi-automated 3D leaf reconstruction and analysis of trichome patterning from light microscopic images. PLoS Comput Biol. 2013 Apr; 9(4):e1003029. PMID: 23637587; PMCID: PMC3630213.
      Citations: 11     Fields:    Translation:AnimalsCells
    46. Failmezger H, Praveen P, Tresch A, Fr?hlich H. Learning gene network structure from time laps cell imaging in RNAi Knock downs. Bioinformatics. 2013 Jun 15; 29(12):1534-40. PMID: 23595660.
      Citations: 6     Fields:    
    47. Wickles S, Leidig C, Becker T, Schmid VJ, Beckmann R, Tresch A, Norousi R. Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs. J Struct Biol. 2013 May; 182(2):59-66. PMID: 23454482.
      Citations: 10     Fields:    Translation:Cells
    48. Schmidt CS, Bultmann S, Meilinger D, Zacher B, Tresch A, Maier KC, Peter C, Martin DE, Leonhardt H, Spada F. Global DNA hypomethylation prevents consolidation of differentiation programs and allows reversion to the embryonic stem cell state. PLoS One. 2012; 7(12):e52629. PMID: 23300728; PMCID: PMC3531338.
      Citations: 18     Fields:    Translation:AnimalsCells
    49. Matic I, Maier KC, Roether S, Tresch A, Mann M, Cramer P, Miller C, Schwalb B, Str?sser K. Mediator phosphorylation prevents stress response transcription during non-stress conditions. J Biol Chem. 2012 Dec 28; 287(53):44017-26. PMID: 23135281; PMCID: PMC3531718.
      Citations: 23     Fields:    Translation:AnimalsCells
    50. Seizl M, Etzold S, Pirkl N, Martin DE, Cramer P, Tresch A, D?mcke S. One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. Nucleic Acids Res. 2012 Oct; 40(18):8883-92. PMID: 22844089; PMCID: PMC3467085.
      Citations: 2     Fields:    Translation:AnimalsCells
    51. Niederberger T, Etzold S, Lidschreiber M, Maier KC, Martin DE, Cramer P, Tresch A, Fr?hlich H. MC EMiNEM maps the interaction landscape of the Mediator. PLoS Comput Biol. 2012; 8(6):e1002568. PMID: 22737066; PMCID: PMC3380870.
      Citations: 10     Fields:    Translation:Animals
    52. Abnaof K, Gade S, Younesi E, Tresch A, Zacher B, Fr?hlich H. Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data. Bioinformatics. 2012 Jul 01; 28(13):1714-20. PMID: 22563068.
      Citations: 14     Fields:    Translation:HumansCells
    53. Schulz D, Pirkl N, Etzold S, Maier KC, Seizl M, Tresch A, Cramer P, Sun M, Schwalb B, Larivi?re L. Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation. Genome Res. 2012 Jul; 22(7):1350-9. PMID: 22466169; PMCID: PMC3396375.
      Citations: 149     Fields:    Translation:AnimalsCells
    54. Schulz D, Sun M, Zacher B, Martin DE, Cramer P, Tresch A, Schwalb B, D?mcke S. Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA). Bioinformatics. 2012 Mar 15; 28(6):884-5. PMID: 22285829.
      Citations: 19     Fields:    Translation:AnimalsCells
    55. Gagneur J, Elze MC, Tresch A. Selective phenotyping, entropy reduction, and the mastermind game. BMC Bioinformatics. 2011 Oct 20; 12:406. PMID: 22014271; PMCID: PMC3258278.
      Citations: 4     Fields:    Translation:HumansAnimals
    56. Krupp M, Maass T, Marquardt JU, Staib F, Bauer T, Biesterfeld S, Galle PR, Tresch A, Teufel A, K?nig R. The functional cancer map: a systems-level synopsis of genetic deregulation in cancer. BMC Med Genomics. 2011 Jun 30; 4:53. PMID: 21718500; PMCID: PMC3148554.
      Citations: 20     Fields:    Translation:HumansCells
    57. Zacher B, Torkler P, Tresch A. Analysis of Affymetrix ChIP-chip data using starr and R/Bioconductor. Cold Spring Harb Protoc. 2011 May 01; 2011(5):pdb.top110. PMID: 21536772.
      Citations: 6     Fields:    Translation:Cells
    58. Zechner U, Schneider E, Tresch A, Gromoll J, Hahn T, Schorsch M, Haaf T, El Hajj N. Methylation status of imprinted genes and repetitive elements in sperm DNA from infertile males. Sex Dev. 2011; 5(2):60-9. PMID: 21293114.
      Citations: 52     Fields:    Translation:HumansCells
    59. Knupfer P, Tresch A, Beerenwinkel N. Learning monotonic genotype-phenotype maps. Stat Appl Genet Mol Biol. 2011; 10:Article 3. PMID: 21291413.
      Citations: 5     Fields:    Translation:HumansCells
    60. Maier K, Schulz D, Zacher B, Mayer A, Sydow J, Marcinowski L, Martin DE, Tresch A, Cramer P, Miller C, Schwalb B, D?mcke S, D?lken L. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol. 2011 Jan 04; 7:458. PMID: 21206491; PMCID: PMC3049410.
      Citations: 202     Fields:    Translation:AnimalsCells
    61. Niederberger T, Hartung S, Hopfner KP, Tresch A. Processive RNA decay by the exosome: merits of a quantitative Bayesian sampling approach. RNA Biol. 2011 Jan-Feb; 8(1):55-60. PMID: 21282980; PMCID: PMC3127079.
      Citations: 5     Fields:    Translation:Cells
    62. Praveen P, Tresch A, Fr?hlich H. Fast and efficient dynamic nested effects models. Bioinformatics. 2011 Jan 15; 27(2):238-44. PMID: 21068003.
      Citations: 13     Fields:    Translation:AnimalsCells
    63. Hoffman A, Sar F, Goetz M, Tresch A, Mudter J, Biesterfeld S, Galle PR, Neurath MF, Kiesslich R. High definition colonoscopy combined with i-Scan is superior in the detection of colorectal neoplasias compared with standard video colonoscopy: a prospective randomized controlled trial. Endoscopy. 2010 Oct; 42(10):827-33. PMID: 20803419.
      Citations: 56     Fields:    Translation:Humans
    64. Sonntag J, Henjes F, Tresch A, Beissbarth T, Wiemann S, Korf U, J?cker A, G?tschel F. QuantProReloaded: quantitative analysis of microspot immunoassays. Bioinformatics. 2010 Oct 01; 26(19):2480-1. PMID: 20709689.
      Citations:    Fields:    
    65. Stritzker J, Weibel S, Seubert C, Tresch A, van Rooijen N, Oelschlaeger TA, Hill PJ, Gentschev I, Szalay AA, G?tz A. Enterobacterial tumor colonization in mice depends on bacterial metabolism and macrophages but is independent of chemotaxis and motility. Int J Med Microbiol. 2010 Nov; 300(7):449-56. PMID: 20547100.
      Citations: 22     Fields:    Translation:AnimalsCells
    66. Zacher B, Kuan PF, Tresch A. Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. BMC Bioinformatics. 2010 Apr 17; 11:194. PMID: 20398407; PMCID: PMC2868012.
      Citations: 14     Fields:    
    67. Hartung S, Niederberger T, Hartung M, Tresch A, Hopfner KP. Quantitative analysis of processive RNA degradation by the archaeal RNA exosome. Nucleic Acids Res. 2010 Aug; 38(15):5166-76. PMID: 20392821; PMCID: PMC2926604.
      Citations: 11     Fields:    Translation:Cells
    68. Schneider E, Pliushch G, El Hajj N, Galetzka D, Puhl A, Schorsch M, Frauenknecht K, Riepert T, Tresch A, Coerdt W, Zechner U, Haaf T, M?ller AM. Spatial, temporal and interindividual epigenetic variation of functionally important DNA methylation patterns. Nucleic Acids Res. 2010 Jul; 38(12):3880-90. PMID: 20194112; PMCID: PMC2896520.
      Citations: 50     Fields:    Translation:HumansCells
    69. Siggelkow W, Schmidt M, Skala C, Boehm D, von Forstner S, Koelbl H, Tresch A. A new algorithm for improving fetal weight estimation from ultrasound data at term. Arch Gynecol Obstet. 2011 Mar; 283(3):469-74. PMID: 20174814; PMCID: PMC3035787.
      Citations: 1     Fields:    Translation:Humans
    70. Pliushch G, Schneider E, Weise D, El Hajj N, Tresch A, Seidmann L, Coerdt W, Zechner U, Haaf T, M?ller AM. Extreme methylation values of imprinted genes in human abortions and stillbirths. Am J Pathol. 2010 Mar; 176(3):1084-90. PMID: 20093482; PMCID: PMC2832130.
      Citations: 23     Fields:    Translation:HumansCells
    71. Klein KU, Schramm P, Glaser M, Reisch R, Tresch A, Werner C, Engelhard K. Intraoperative monitoring of cerebral microcirculation and oxygenation--a feasibility study using a novel photo-spectrometric laser-Doppler flowmetry. J Neurosurg Anesthesiol. 2010 Jan; 22(1):38-45. PMID: 19816204.
      Citations: 8     Fields:    Translation:Humans
    72. Buness A, Ruschhaupt M, Kuner R, Tresch A. Classification across gene expression microarray studies. BMC Bioinformatics. 2009 Dec 30; 10:453. PMID: 20042109; PMCID: PMC2811711.
      Citations: 6     Fields:    
    73. Zechner U, Pliushch G, Schneider E, El Hajj N, Tresch A, Shufaro Y, Seidmann L, Coerdt W, Haaf T, M?ller AM. Quantitative methylation analysis of developmentally important genes in human pregnancy losses after ART and spontaneous conception. Mol Hum Reprod. 2010 Sep; 16(9):704-13. PMID: 20007506.
      Citations: 29     Fields:    Translation:HumansCells
    74. Klein KU, Glaser M, Reisch R, Tresch A, Werner C, Engelhard K. The effects of arterial carbon dioxide partial pressure and sevoflurane on capillary venous cerebral blood flow and oxygen saturation during craniotomy. Anesth Analg. 2009 Jul; 109(1):199-204. PMID: 19535711.
      Citations: 4     Fields:    Translation:Humans
    75. Hoffman A, Kagel C, Goetz M, Tresch A, Mudter J, Biesterfeld S, Galle PR, Neurath MF, Kiesslich R. Recognition and characterization of small colonic neoplasia with high-definition colonoscopy using i-Scan is as precise as chromoendoscopy. Dig Liver Dis. 2010 Jan; 42(1):45-50. PMID: 19473893.
      Citations: 38     Fields:    Translation:Humans
    76. Haaf T, Tresch A, Lambrecht A, Schwaab E, Khanaga O, Hahn T, Schorsch M, Grossmann B. Outcome of intracytoplasmic sperm injection with and without polar body diagnosis of oocytes. Fertil Steril. 2010 Feb; 93(2):405-15. PMID: 19342037.
      Citations:    Fields:    Translation:HumansCells
    77. Tresch A, Beissbarth T, Fr?hlich H. Nested effects models for learning signaling networks from perturbation data. Biom J. 2009 Apr; 51(2):304-23. PMID: 19358219.
      Citations: 14     Fields:    Translation:HumansCells
    78. Anchang B, Sadeh MJ, Jacob J, Tresch A, Vlad MO, Oefner PJ, Spang R. Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models. Proc Natl Acad Sci U S A. 2009 Apr 21; 106(16):6447-52. PMID: 19329492; PMCID: PMC2672479.
      Citations: 24     Fields:    Translation:AnimalsCells
    79. Winkelheide U, Stallmann S, Orth C, Schneider A, Tresch A, Werner C, Engelhard K, Lasarzik I. Assessment of postischemic neurogenesis in rats with cerebral ischemia and propofol anesthesia. Anesthesiology. 2009 Mar; 110(3):529-37. PMID: 19212268.
      Citations: 8     Fields:    Translation:Animals
    80. Hoffman A, Basting N, Goetz M, Tresch A, Mudter J, Biesterfeld S, Galle PR, Neurath MF, Kiesslich R. High-definition endoscopy with i-Scan and Lugol's solution for more precise detection of mucosal breaks in patients with reflux symptoms. Endoscopy. 2009 Feb; 41(2):107-12. PMID: 19214887.
      Citations: 24     Fields:    Translation:HumansCTClinical Trials
    81. Zeller C, Tresch A, Fr?hlich H. A Bayesian network view on nested effects models. EURASIP J Bioinform Syst Biol. 2009; 195272. PMID: 19148294; PMCID: PMC3171420.
      Citations: 6     
    82. Korf U, Derdak S, Tresch A, Henjes F, Schumacher S, Schmidt C, Hahn B, Lehmann WD, Poustka A, Beissbarth T, Klingm?ller U. Quantitative protein microarrays for time-resolved measurements of protein phosphorylation. Proteomics. 2008 Nov; 8(21):4603-12. PMID: 18972530.
      Citations: 15     Fields:    Translation:AnimalsCells
    83. Fassunke J, Majores M, Tresch A, Niehusmann P, Grote A, Schoch S, Becker AJ. Array analysis of epilepsy-associated gangliogliomas reveals expression patterns related to aberrant development of neuronal precursors. Brain. 2008 Nov; 131(Pt 11):3034-50. PMID: 18819986.
      Citations: 14     Fields:    Translation:HumansCells
    84. May A, Kirchner R, Hartmann P, El Hajj N, Tresch A, Zechner U, Mann W, Haaf T, M?ller H. Multiplex rt-PCR expression analysis of developmentally important genes in individual mouse preimplantation embryos and blastomeres. Biol Reprod. 2009 Jan; 80(1):194-202. PMID: 18784354.
      Citations: 10     Fields:    Translation:AnimalsCells
    85. Beissbarth T, Tresch A, Kostka D, Jacob J, Spang R, Markowetz F, Fr?hlich H. Analyzing gene perturbation screens with nested effects models in R and bioconductor. Bioinformatics. 2008 Nov 01; 24(21):2549-50. PMID: 18718939; PMCID: PMC2732276.
      Citations: 16     Fields:    
    86. Haaf T, Hahn A, Lambrecht A, Schwaab E, Khanaga O, Hahn T, Tresch A, Schorsch M, Grossmann B. A high oocyte yield for intracytoplasmic sperm injection treatment is associated with an increased chromosome error rate. Fertil Steril. 2009 Mar; 91(3):733-8. PMID: 18314124.
      Citations: 11     Fields:    Translation:Humans
    87. Tresch A, Markowetz F. Structure learning in Nested Effects Models. Stat Appl Genet Mol Biol. 2008; 7(1):Article9. PMID: 18312214.
      Citations: 25     Fields:    Translation:Animals
    88. Hofmann A, Ritz U, Hessmann MH, Schmid C, Tresch A, Rompe JD, Meurer A, Rommens PM. Cell viability, osteoblast differentiation, and gene expression are altered in human osteoblasts from hypertrophic fracture non-unions. Bone. 2008 May; 42(5):894-906. PMID: 18314404.
      Citations: 27     Fields:    Translation:HumansCells
    89. Korf U, Henjes F, Schmidt C, Tresch A, Mannsperger H, Beissbarth T, Poustka A, L?bke C. Antibody microarrays as an experimental platform for the analysis of signal transduction networks. Adv Biochem Eng Biotechnol. 2008; 110:153-75. PMID: 18528667.
      Citations: 4     Fields:    Translation:Cells
    90. Tresch A, Beissbarth T, Kuner R, Poustka A, Buness A, S?ltmann H. Discrimination of direct and indirect interactions in a network of regulatory effects. J Comput Biol. 2007 Nov; 14(9):1217-28. PMID: 17990974.
      Citations: 10     Fields:    
    91. Buness A, Kuner R, Ruschhaupt M, Poustka A, Tresch A, S?ltmann H. Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer. Bioinformatics. 2007 Sep 01; 23(17):2273-80. PMID: 17599933.
      Citations: 22     Fields:    Translation:Humans
    92. Gieseler F, Tresch A, Hammer S, Seufert J, Schneider D, Jakob F. Kinetics of nuclear translocation and turnover of the vitamin D receptor in human HL60 leukemia cells and peripheral blood lymphocytes--coincident rise of DNA-relaxing activity in nuclear extracts. J Steroid Biochem Mol Biol. 1992 Mar; 42(1):11-6. PMID: 1313693.
      Citations: 2     Fields:    Translation:HumansCells

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