Connection
Ivan Costa to Humans
This is a "connection" page, showing publications Ivan Costa has written about Humans.
Connection Strength
2,439
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Genetic barcoding systematically compares genes in del(5q) MDS and reveals a central role for CSNK1A1 in clonal expansion. Blood Adv. 2022 03 22; 6(6):1780-1796.
Score: 0,119
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CALR frameshift mutations in MPN patient-derived iPSCs accelerate maturation of megakaryocytes. Stem Cell Reports. 2021 11 09; 16(11):2768-2783.
Score: 0,115
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From cell to cell: Identification of actionable targets in bone marrow fibrosis using single-cell technologies. Exp Hematol. 2021 12; 104:48-54.
Score: 0,115
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Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data. Nucleic Acids Res. 2019 11 18; 47(20):10580-10596.
Score: 0,101
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Analysis of computational footprinting methods for DNase sequencing experiments. Nat Methods. 2016 Apr; 13(4):303-9.
Score: 0,078
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A multiple kernel learning algorithm for drug-target interaction prediction. BMC Bioinformatics. 2016 Jan 22; 17:46.
Score: 0,077
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Thrombin stimulates insulin secretion via protease-activated receptor-3. Islets. 2015; 7(4):e1118195.
Score: 0,072
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Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications. Bioinformatics. 2014 Nov 15; 30(22):3143-51.
Score: 0,070
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The interaction of MYC with the trithorax protein ASH2L promotes gene transcription by regulating H3K27 modification. Nucleic Acids Res. 2014 Jun; 42(11):6901-20.
Score: 0,069
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On the selection of appropriate distances for gene expression data clustering. BMC Bioinformatics. 2014; 15 Suppl 2:S2.
Score: 0,067
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Proximity measures for clustering gene expression microarray data: a validation methodology and a comparative analysis. IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug; 10(4):845-57.
Score: 0,065
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Constrained mixture estimation for analysis and robust classification of clinical time series. Bioinformatics. 2009 Jun 15; 25(12):i6-14.
Score: 0,049
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Gene expression trees in lymphoid development. BMC Immunol. 2007 Oct 09; 8:25.
Score: 0,044
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Sublethal necroptosis signaling promotes inflammation and liver cancer. Immunity. 2023 07 11; 56(7):1578-1595.e8.
Score: 0,032
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Mast cell deficiency prevents BCR::ABL1 induced splenomegaly and cytokine elevation in a CML mouse model. Leukemia. 2023 07; 37(7):1474-1484.
Score: 0,032
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Targeting cytokine-induced leukemic stem cell persistence in chronic myeloid leukemia by IKK2-inhibition. Haematologica. 2023 04 01; 108(4):1179-1185.
Score: 0,032
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KIT D816V Mast Cells Derived from Induced Pluripotent Stem Cells Recapitulate Systemic Mastocytosis Transcriptional Profile. Int J Mol Sci. 2023 Mar 09; 24(6).
Score: 0,032
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Platelet-instructed SPP1+ macrophages drive myofibroblast activation in fibrosis in a CXCL4-dependent manner. Cell Rep. 2023 02 28; 42(2):112131.
Score: 0,032
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Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling. Front Immunol. 2022; 13:1066176.
Score: 0,031
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HIF1a-AS1 is a DNA:DNA:RNA triplex-forming lncRNA interacting with the HUSH complex. Nat Commun. 2022 Nov 02; 13(1):6563.
Score: 0,031
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Adult human kidney organoids originate from CD24+ cells and represent an advanced model for adult polycystic kidney disease. Nat Genet. 2022 11; 54(11):1690-1701.
Score: 0,031
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Spatial multi-omic map of human myocardial infarction. Nature. 2022 08; 608(7924):766-777.
Score: 0,030
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Mapping the cardiac vascular niche in heart failure. Nat Commun. 2022 05 31; 13(1):3027.
Score: 0,030
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LINC00152 Drives a Competing Endogenous RNA Network in Human Hepatocellular Carcinoma. Cells. 2022 05 03; 11(9).
Score: 0,030
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Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling. Development. 2022 05 01; 149(9).
Score: 0,030
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SARS-CoV-2 infects the human kidney and drives fibrosis in kidney organoids. Cell Stem Cell. 2022 02 03; 29(2):217-231.e8.
Score: 0,029
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CrossTalkeR: analysis and visualization of ligand-receptorne tworks. Bioinformatics. 2021 11 18; 37(22):4263-4265.
Score: 0,029
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Transcriptional changes and the role of ONECUT1 in hPSC pancreatic differentiation. Commun Biol. 2021 11 17; 4(1):1298.
Score: 0,029
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Mutations and variants of ONECUT1 in diabetes. Nat Med. 2021 11; 27(11):1928-1940.
Score: 0,029
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Cognate recognition of microbial antigens defines constricted CD4+ T?cell receptor repertoires in the inflamed colon. Immunity. 2021 11 09; 54(11):2565-2577.e6.
Score: 0,029
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Early and late stage MPN patients show distinct gene expression profiles in CD34+ cells. Ann Hematol. 2021 Dec; 100(12):2943-2956.
Score: 0,028
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SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas. Nat Metab. 2021 02; 3(2):149-165.
Score: 0,027
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The Expression of the Cancer-Associated lncRNA Snhg15 Is Modulated by EphrinA5-Induced Signaling. Int J Mol Sci. 2021 Jan 29; 22(3).
Score: 0,027
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Heterogeneous bone-marrow stromal progenitors drive myelofibrosis via a druggable alarmin axis. Cell Stem Cell. 2021 04 01; 28(4):637-652.e8.
Score: 0,027
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Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites. BMC Biol. 2020 11 24; 18(1):178.
Score: 0,027
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Therapeutic inhibition of Fc?RIIb signaling targets leukemic stem cells in chronic myeloid leukemia. Leukemia. 2020 10; 34(10):2635-2647.
Score: 0,026
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DNA Methylation-Mediated Modulation of Endocytosis as Potential Mechanism for Synaptic Function Regulation in Murine Inhibitory Cortical Interneurons. Cereb Cortex. 2020 06 01; 30(7):3921-3937.
Score: 0,026
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Aging-regulated anti-apoptotic long non-coding RNA Sarrah augments recovery from acute myocardial infarction. Nat Commun. 2020 04 27; 11(1):2039.
Score: 0,026
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Hypoxia-inducible factor 1 (HIF-1) is a new therapeutic target in JAK2V617F-positive myeloproliferative neoplasms. Leukemia. 2020 04; 34(4):1062-1074.
Score: 0,025
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Infliximab therapy together with tyrosine kinase inhibition targets leukemic stem cells in chronic myeloid leukemia. BMC Cancer. 2019 Jul 04; 19(1):658.
Score: 0,025
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Hematopoietic stem and progenitor cell proliferation and differentiation requires the trithorax protein Ash2l. Sci Rep. 2019 06 04; 9(1):8262.
Score: 0,024
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Impaired cellular energy metabolism in cord blood macrophages contributes to abortive response toward inflammatory threats. Nat Commun. 2019 04 11; 10(1):1685.
Score: 0,024
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Detection of RNA-DNA binding sites in long noncoding RNAs. Nucleic Acids Res. 2019 04 08; 47(6):e32.
Score: 0,024
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Differential roles of STAT1 and STAT2 in the sensitivity of JAK2V617F- vs. BCR-ABL-positive cells to interferon alpha. J Hematol Oncol. 2019 04 02; 12(1):36.
Score: 0,024
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Isolation and genome-wide characterization of cellular DNA:RNA triplex structures. Nucleic Acids Res. 2019 03 18; 47(5):2306-2321.
Score: 0,024
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Stem cell persistence in CML is mediated by extrinsically activated JAK1-STAT3 signaling. Leukemia. 2019 08; 33(8):1964-1977.
Score: 0,024
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Identification of transcription factor binding sites using ATAC-seq. Genome Biol. 2019 02 26; 20(1):45.
Score: 0,024
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yylncT Defines a Class of Divergently Transcribed lncRNAs and Safeguards the T-mediated Mesodermal Commitment of Human PSCs. Cell Stem Cell. 2019 02 07; 24(2):318-327.e8.
Score: 0,024
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JAK2V617F but not CALR mutations confer increased molecular responses to interferon-a via JAK1/STAT1 activation. Leukemia. 2019 04; 33(4):995-1010.
Score: 0,024
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Transcription factor motif enrichment in whole transcriptome analysis identifies STAT4 and BCL6 as the most prominent binding motif in systemic juvenile idiopathic arthritis. Arthritis Res Ther. 2018 05 30; 20(1):98.
Score: 0,023
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HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types. Mol Cell. 2018 05 17; 70(4):730-744.e6.
Score: 0,023
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Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis. Hepatology. 2018 04; 67(4):1270-1283.
Score: 0,022
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Clustering of RNA-Seq samples: Comparison study on cancer data. Methods. 2018 01 01; 132:42-49.
Score: 0,021
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Surface Topography Guides Morphology and Spatial Patterning of Induced Pluripotent Stem Cell Colonies. Stem Cell Reports. 2017 08 08; 9(2):654-666.
Score: 0,021
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Sox5 regulates beta-cell phenotype and is reduced in type 2 diabetes. Nat Commun. 2017 06 06; 8:15652.
Score: 0,021
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Binding of nuclear factor ?B to noncanonical consensus sites reveals its multimodal role during the early inflammatory response. Genome Res. 2016 11; 26(11):1478-1489.
Score: 0,020
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Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling. Gut. 2017 03; 66(3):473-486.
Score: 0,020
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The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation. Nucleic Acids Res. 2016 12 15; 44(22):10631-10643.
Score: 0,020
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Tbx3 fosters pancreatic cancer growth by increased angiogenesis and activin/nodal-dependent induction of stemness. Stem Cell Res. 2016 09; 17(2):367-378.
Score: 0,020
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Detection of Hot-Spot Mutations in Circulating Cell-Free DNA From Patients With Intraductal Papillary Mucinous Neoplasms of?the Pancreas. Gastroenterology. 2016 08; 151(2):267-70.
Score: 0,020
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Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures. Aging (Albany NY). 2016 05; 8(5):1034-48.
Score: 0,020
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Epigenetic Classification of Human Mesenchymal Stromal Cells. Stem Cell Reports. 2016 Feb 09; 6(2):168-75.
Score: 0,019
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DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy. Aging (Albany NY). 2016 Feb; 8(2):394-401.
Score: 0,019
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Mtss1 is a critical epigenetically regulated tumor suppressor in CML. Leukemia. 2016 Apr; 30(4):823-32.
Score: 0,019
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Impact of missing data imputation methods on gene expression clustering and classification. BMC Bioinformatics. 2015 Feb 26; 16:64.
Score: 0,018
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Hematopoietic stem and progenitor cells acquire distinct DNA-hypermethylation during in vitro culture. Sci Rep. 2013 Nov 28; 3:3372.
Score: 0,017
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Discovering motifs that induce sequencing errors. BMC Bioinformatics. 2013; 14 Suppl 5:S1.
Score: 0,016
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CLEVER: clique-enumerating variant finder. Bioinformatics. 2012 Nov 15; 28(22):2875-82.
Score: 0,015
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H2O2-dependent translocation of TCTP into the nucleus enables its interaction with VDR in human keratinocytes: TCTP as a further module in calcitriol signalling. J Steroid Biochem Mol Biol. 2010 Jan; 118(1-2):29-40.
Score: 0,012
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Clustering cancer gene expression data: a comparative study. BMC Bioinformatics. 2008 Nov 27; 9:497.
Score: 0,012
